Pairwise Alignments

Query, 1289 a.a., IcmF-related protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1111 a.a., type VI secretion protein VasK from Pseudomonas simiae WCS417

 Score =  266 bits (679), Expect = 1e-74
 Identities = 312/1242 (25%), Positives = 502/1242 (40%), Gaps = 168/1242 (13%)

Query: 64   NWSMSIIGISVLCLAIGFVTPLLALGDVHPFAPLWVRLTLIGFILLMYALYGLYRLWRAL 123
            +W  S++ +    L + F  PLLA+ D   +     RL  I  +LL   L+GL  +    
Sbjct: 15   SWVYSLLLVLSCALLVWFFGPLLAVDDYRFWQSPTSRLLTISGLLL---LWGLAMVGMGA 71

Query: 124  RMDEQLLRRFLHPRGEEVPVAGEIKADLRTVNHIVTQAIRQLRQLRVDMPGWRKIFEGKR 183
            R   +L +   H R +   +  E    +R       QA++  R+       WR       
Sbjct: 72   RRTARLNQPEEHERHQRRALINEEIRQVRARFKEALQALKTSRRYGERSERWRD------ 125

Query: 184  FLYELPWFMVVGSPGDGKTTALLNTGLQFPLAEQMEQTSRILTVPGGGTLHCDWWFTNEA 243
               ELPW++++G  G GKT+ L  +GL  P              P G    CDW+F  +A
Sbjct: 126  ---ELPWYLLIGEQGSGKTSLLAASGLPSPFDHPD-------AAPLGAASWCDWYFAEDA 175

Query: 244  VLIDTAGRYARHDDGGEASAAQRNAGEWQGFLGLLRKHRPGAPLNGVILTLNVADLTAQS 303
            VL++ AGRY    D    +A       W   L LL+  R   PLNGV++TL+   L++ +
Sbjct: 176  VLVEAAGRYLGQPDPSVDAAG------WSTLLDLLKWRRRSRPLNGVVVTLSADTLSSSN 229

Query: 304  PAERLAACAALRARLAELRETLGIRFPVYLVVTKMDLLPGFSEYFRTLTSHLRAQIWGFT 363
              +       +R RL ++++TL +  PVYLV+T+ D L GF+E+F         Q+ G  
Sbjct: 230  EHDLERHARHVRTRLQDIQQTLHVDVPVYLVLTQSDRLAGFAEFFDAQQGDGTEQVLG-- 287

Query: 364  LPYSRRRKAGDPQALHAACAQELARLTLRLDQGLDTRLQEEYDLKSRQRLYTFPREFAAL 423
                     GD     A        L  RL   L  RL +E +++ R  +  FPR+ A +
Sbjct: 288  ---------GDLGTDLAQVRDVFENLLQRLGGDLIPRLHQERNVERRGHMLDFPRQVARI 338

Query: 424  GEPLLEAIEQIFLDSKFDATQLNNTLRGVFFTSAAQAQADAVADQLSIWQRFVRAIKTAR 483
            G+ L   IE  F     +  Q  N LRG + T A                          
Sbjct: 339  GDALCLFIEAAF---SVNRNQPINALRGFYLTCAKTVDV--------------------- 374

Query: 484  GESSASLPHALPDGNRSYFLHDLLTQFIFREAHLVEPNLQWAWRYRLLRLGGHLLVLVLA 543
                           R +F+  L  + IF EA   +  L    R R+ R  G + +    
Sbjct: 375  ---------------RPHFVQGLFKRVIFAEAD--QAGLLTPERQRIHRRHGWMALAATV 417

Query: 544  FLLWQGMQTSQQTNGDYLNEISARATRLDGDVKAYTGKPAMA----PVPALLDSARELSA 599
             +   G   +   + ++      R  +L G +   TG P  A     +  LLDS   L+A
Sbjct: 418  VIGTVGAVWAHSYSFNH-----QRLLQLTGLIHTQTGTPPGADESHALLTLLDS--RLAA 470

Query: 600  WPELDPDAPPLAW--RYGLYSVPPVTDSVASLYNRLLDQLLLPPLVKRMEYVLADAIARQ 657
                 P A    W  R GLY        +A+ Y   L Q  LP +   +E  +  ++   
Sbjct: 471  TQVFSPQA-QARWIDRAGLYQGALSIAPLAAAYEHTLQQRFLPYVATVLEGRVRGSLG-- 527

Query: 658  DSKAAYDALRIYLLLNLDKDHEDKYNAAEIQSWVINDLGNSDSVAG-FGGRAAVLTHIEA 716
            D +   D LR YL+LNL +  ++        +W+      ++ V+G + G ++    +  
Sbjct: 528  DREQLLDNLRAYLMLNLRERRDN--------AWL------AEYVSGQWSGDSSANKRLNE 573

Query: 717  LFDGSRVVHSPY--EKDEALIRQARAFLDGHTSTERIYARALAAMESEAPQEFTLVRAVG 774
             F  +R++  P+    DEAL+ +AR  L G +  E +Y RAL        ++   V    
Sbjct: 574  HF--ARLLEQPFLAPLDEALVARARLVLRGESLAEVVY-RALR-------EQARNVEPYP 623

Query: 775  ADAGTVFVRSNGAPLDRGVPGIFTREGYRELFDKRLPEFVAAATANDGWVMGRESTPKKL 834
               G  F R     ++  +PG +TR+ Y +LF+++  + V  A A D WV+G E      
Sbjct: 624  LAEGPAFSR-----VEPPIPGFYTRK-YLQLFEQQGTQMV-HAIAQDNWVLG-EGGDLGA 675

Query: 835  TDSLRSQIPGQEQSVAREVRRLYLTEYARRWQDFLDSIHSINSAGEEGSSGLAYDLQVLR 894
             D  R  +  +++         Y +EYA  W D L  I       E GS  L    + L 
Sbjct: 676  ADLRRLMLVLEQR---------YFSEYADVWSDALGRIR----LRESGS--LQQGAEYLA 720

Query: 895  TLASPDSPLMRLGKAVVEQTTLVPPPDPQARQKQLAQRASGNAGKVVQTAKLFQDIHPEE 954
            +L S  S L++L + V E T LV   D   R +   Q  +G     V +  L +   P+ 
Sbjct: 721  SLTSAQSALVQLLQQVRENTRLVSVSD---RLETAVQPVAGLG--AVTSRSLARAGLPDN 775

Query: 955  RLEKTLVDDRFAALREVIAGRTDGGQSGGGTMQIASLLTMLNEYYTQLTIA--DSA---- 1008
               +  +  RF  L +++    D  Q+ GG  ++   L +L+E   QL+    DS+    
Sbjct: 776  --ARRALQRRFEPLHQLL----DEQQNPGG--ELTQALRLLDELQLQLSAVSRDSSPEQA 827

Query: 1009 ---LAAGTLPARITAADKLQLEAAKLPAPLKNILLDLTKQGTRKINAGTGDVLNTQMEAM 1065
               +A   +  +      L+  AA+ P PLK     +  Q  R++       +N   +  
Sbjct: 828  AFKMARQRMDGQQPLLGNLRDTAARFPQPLKGWFEGIADQSWRQLLDDAYGFVNQHYQNE 887

Query: 1066 MGDDCRDAIDGRYPF-ADSPQEVSAEDFNRIFASGGVLDAFWSKQLAPLADTASDPWRYK 1124
            +      AI  RYPF A +  +V+  DF   F   G +  F+   L P      + +R +
Sbjct: 888  VYGFYAKAIQRRYPFDAHAGSDVALGDFQAFFKPRGAMARFYESYLRPFVIVEGNRYRLR 947

Query: 1125 PTEG-NMTLQGPDLTPFQQAKQIRSVFFNSEGGKKFSWSMQISVVDMDPAIMELVIDIDG 1183
              EG ++ +    L    +A+ IR  FF  + G + +    ++   +D A+    + +  
Sbjct: 948  GIEGRSLPMSRSLLEQLTRAQIIRQGFFTEDQG-ELAVRFTLAPYSLDQAVSRATLRVGD 1006

Query: 1184 QVLRYAHGPDRPLKVTWPGPRNGSMAEITASPRIRQDTSTLLTGGPWALFHLLDAGMVQE 1243
            Q L Y HGP  P+   WP       + +       +        G W+LF   D    + 
Sbjct: 1007 QQLEYRHGPIVPVAFHWPNEAENGRSSLVLERGAERPLGIEKDSGAWSLFRFFDLMQSEP 1066

Query: 1244 TAVRGRQLVEYDFDGRRVVLEITAGRDFNPVSRELLQNFSCP 1285
             + R  Q+++ D  G R    +T+ RD +P      + F  P
Sbjct: 1067 ASGRDAQVLKADLAGLRANYLLTSQRDSSPFQMATWRTFRLP 1108