Pairwise Alignments

Query, 1026 a.a., Multidrug transporter MdtC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1056 a.a., Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like from Variovorax sp. SCN45

 Score =  948 bits (2450), Expect = 0.0
 Identities = 524/1041 (50%), Positives = 699/1041 (67%), Gaps = 31/1041 (2%)

Query: 5    ALFIYRPVATILIAAAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVA 64
            A FI RP+ T L+A AI L G   F LLPVAPLPQVDFP I VSASLPGASPETMAS+VA
Sbjct: 5    ATFIKRPIGTTLLALAILLVGAAVFPLLPVAPLPQVDFPTIQVSASLPGASPETMASNVA 64

Query: 65   TPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAAQSLLPGGMP 124
             PLER+   IAG+++MTS+S LG+T+I L+F+ DR I+ AA DVQAAINA+   LP  +P
Sbjct: 65   QPLERNFSLIAGLSQMTSTSGLGNTQITLQFDLDRSIDAAALDVQAAINASTGQLPANLP 124

Query: 125  SRPTYRKANPSDAPIMILTLTSESWSQGKLYDFASTQLAQTIAQIDGVGDVDVGGSSLPA 184
            S PT+RK NP+DAPI+IL++ S++    ++ D+A   LAQ I+QI GVG V++GG   PA
Sbjct: 125  SPPTFRKVNPADAPILILSVQSKTLPLTEVNDYADNILAQQISQISGVGLVNIGGVQKPA 184

Query: 185  VRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDELKTAAEYQPL 244
            VRV ++P  L   G+SL++VR  + SA V  P+G I+     + + TND+L  A  +  +
Sbjct: 185  VRVQVDPAKLAALGLSLEDVRTVLASATVNAPKGTIDGPNQSFTVYTNDQLLKAQPWNDV 244

Query: 245  IIHYNNGAAVRLGDVASVTDSVQDVRNAGMTNAKPA------------ILLMIRKLPEAN 292
            ++ Y NGA +R+ D+    D  ++ + AG   A  A            I+L I K P AN
Sbjct: 245  VLAYRNGAPIRVRDLGVAVDGPENSKIAGWAYAGAAAPAGSNVQNGRSIVLAITKQPGAN 304

Query: 293  IIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEVEETLAISVALVILVVFLF 352
            +I+TVD I A LP L+A IP  +D+    DR+ TIRAS+++VE TL +++ALV+ V+F+F
Sbjct: 305  VIETVDRINAALPRLKASIPPTVDVNAIIDRTQTIRASVKDVEFTLLLTIALVVAVIFVF 364

Query: 353  LRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIAR 412
            LR+  ATLIP+V VP++L+GT   MYL G+SL+NLSLMALTIA GFVVDDAIV+LENI R
Sbjct: 365  LRNVPATLIPSVTVPLALLGTVGVMYLLGYSLDNLSLMALTIAVGFVVDDAIVMLENIYR 424

Query: 413  HLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIG 472
            ++E GM  ++AA +G  E+GFT+IS+S+SLVAVF+PLLLMGG+ GRL REFAVT+++ I 
Sbjct: 425  YVEEGMTAMEAAYKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVTLTIV 484

Query: 473  ISLVVSLTLTPMMCGWMLKSSKPRTQPR-----KRGVGRLLVALQQGYGTSLKWVLNHTR 527
            +S+++SLTLTPM+C   LK+       R     +RG   +L     GY   L  VL+H  
Sbjct: 485  VSVIISLTLTPMLCSRFLKNEHGNKHGRLYQLFERGFDAML----NGYKRGLHVVLDHQF 540

Query: 528  LVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQDFMKIIR 587
            +  +VF+ TVA    L+  IPK FFP+QDTG + G  ++ Q  SF +M  ++     ++R
Sbjct: 541  ITLMVFIATVAATGVLFAVIPKGFFPQQDTGFISGFAESAQDASFASMNARMIQLADVVR 600

Query: 588  DDPAVNNVTGFT---GGSRVNSGMMFITLKPRGE-RKETAQQIIDRLRVKLAKEPGARLF 643
             DP   +VTGF      S  N+G  +I+LKP+ E R  TA +II RLR +LAK  G  LF
Sbjct: 601  KDP---DVTGFGMNGSSSTYNTGNFYISLKPKDEGRTATADEIITRLRPQLAKVQGVNLF 657

Query: 644  LMAVQDIRVGGRQANASYQYTLLSDSLAALREWEPKIRKALSALPQLADVNSDQQDNGAE 703
            L A QDIRVGGR +   YQYT+    L  L  W PK+      LP+L D+ +DQQ+  A 
Sbjct: 658  LQAGQDIRVGGRASRTQYQYTVTDADLDELNTWAPKLLARFKQLPELTDLATDQQNAAAS 717

Query: 704  MNLIYDRDTMSRLGIDVQAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRYSQDISAL 763
              L  DRD  S  GI     ++ L +A GQRQ++  +  +N Y VV+EV P   QD +  
Sbjct: 718  AVLTIDRDRASSFGISPATIDATLYDAIGQRQVAQYFTQLNSYHVVLEVTPGVQQDPALF 777

Query: 764  EKMFVINR-DGKAIPLSYFAQWRPAN-APLSVNHQGLSAASTIAFNLPTGTSLSQATEAI 821
             K+++ +   G+ +PLS F +   +  A LS++HQG   A TI+FNL  G +L  A  AI
Sbjct: 778  SKLYLSSPITGQQVPLSTFVKVDTSKTAYLSISHQGQFPAVTISFNLAPGVALGDAVNAI 837

Query: 822  NRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTIL 881
            N+   ++G+P ++ GSF GTAQ FQ ++ +Q  LI AA+  VYIVLG+LYESY+HPLTIL
Sbjct: 838  NKAQAEMGLPQSLTGSFQGTAQAFQDSLATQPYLIAAALVAVYIVLGLLYESYIHPLTIL 897

Query: 882  STLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQ 941
            STLPSAGVGALL L       S+IALIGI+LLIGIVKKN IMM+DFAL+A+R  G++P  
Sbjct: 898  STLPSAGVGALLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALKAEREQGMSPHD 957

Query: 942  AIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLLTLYTT 1001
            AI+QACLLRFRPIMMTT+ AL   LPL+L  G GSELR+PLG  +VGGL++SQ LTL+TT
Sbjct: 958  AIYQACLLRFRPIMMTTMCALLSGLPLMLGHGSGSELRRPLGYAMVGGLILSQALTLFTT 1017

Query: 1002 PVVYLFFDRLRLRF-SRKNSK 1021
            PVVYL+ DR    + SRK ++
Sbjct: 1018 PVVYLYLDRAHYWYLSRKEAR 1038