Pairwise Alignments

Query, 1026 a.a., Multidrug transporter MdtC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1033 a.a., MdtB/MuxB family multidrug efflux RND transporter permease subunit from Pseudomonas fluorescens SBW25

 Score =  964 bits (2493), Expect = 0.0
 Identities = 511/1025 (49%), Positives = 701/1025 (68%), Gaps = 8/1025 (0%)

Query: 1    MRFFALFIYRPVATILIAAAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMA 60
            M    LFI RPVAT L   AI L GI+ +RLLPV+ LPQVD+P I V    PGASP+ M 
Sbjct: 1    MNLSRLFILRPVATTLSMLAIVLAGIISYRLLPVSALPQVDYPTIRVMTLYPGASPDVMT 60

Query: 61   SSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAAQSLLP 120
            S+V  PLER  G++ G+ +M S+SS G++ + L FN D +++ A + VQAAINAA +LLP
Sbjct: 61   SAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFNLDINMDVAEQQVQAAINAATNLLP 120

Query: 121  GGMPSRPTYRKANPSDAPIMILTLTSESWSQGKLYDFASTQLAQTIAQIDGVGDVDVGGS 180
              +P+ P Y K NP+D P++ L +TS +    KL D   T++AQ IAQI GVG V + G 
Sbjct: 121  KDLPAPPVYNKVNPADTPVLTLAITSNTMLLPKLNDLVDTRMAQKIAQISGVGMVSIAGG 180

Query: 181  SLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDELKTAAE 240
               AVR+ +NP+AL   G++L +VR  I ++NV +P+G  +       +  ND+L +  +
Sbjct: 181  QRQAVRIKVNPEALAANGLNLSDVRTLIAASNVNQPKGNFDGPTRVSMLDANDQLVSPQQ 240

Query: 241  YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDGI 300
            Y  LI+ YNNGA +RL DVA + D  ++ R A   N   A+LL I++ P AN+I+ VD I
Sbjct: 241  YAELILAYNNGAPLRLKDVAQIVDGAENERLAAWANENQAVLLNIQRQPGANVIEVVDRI 300

Query: 301  RAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEVEETLAISVALVILVVFLFLRSGRATL 360
            +A LP +   +PA +D+ +  DR+ TIRAS+++V+  L I++ALV++V FLFLR   AT+
Sbjct: 301  KALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRVSATI 360

Query: 361  IPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHLEAGMKP 420
            IP++AVP+SL+GTF  MYL GFS+NNL+LMALTIATGFVVDDAIV+LENI+R++E G  P
Sbjct: 361  IPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMLENISRYIEEGETP 420

Query: 421  LQAALQGTREVGFTVISMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGISLVVSLT 480
            L AAL+G +++GFT+IS++LSL+AV +PLL M  + GRL REFA+TL+VAI ISLVVSLT
Sbjct: 421  LAAALKGAKQIGFTLISLTLSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLT 480

Query: 481  LTPMMCGWMLKSSKPRTQPRKR---GVGRLLVALQQGYGTSLKWVLNHTRLVGVVFLGTV 537
            LTPMMC  +LK  +P+ + + R     G  +  L   YG+ L+WVL H  L  +V + T+
Sbjct: 481  LTPMMCARLLK-REPKIEEQSRFYKASGAWIDWLIARYGSMLQWVLKHQPLTLLVAIATL 539

Query: 538  ALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQDFMKIIRDDPAVNNVTG 597
             L + LY+ +PK FFP QDTGV+ G  +A QSISF AM  + Q   KII  DPAV +++ 
Sbjct: 540  GLTVCLYLVVPKGFFPVQDTGVIQGISEAPQSISFAAMSQRQQQLAKIILADPAVESLSS 599

Query: 598  FTG----GSRVNSGMMFITLKPRGERKETAQQIIDRLRVKLAKEPGARLFLMAVQDIRVG 653
            + G     + +NSG + I LK  G+R  +A Q+I RL+ ++ K  G RLF+  VQD+ + 
Sbjct: 600  YIGVDGDNATLNSGRLLINLKAHGQRDLSAAQVITRLQPEIDKLVGIRLFMQPVQDLTIE 659

Query: 654  GRQANASYQYTLLSDSLAALREWEPKIRKALSALPQLADVNSDQQDNGAEMNLIYDRDTM 713
             R +   YQ+++ S     L  W  K+  ALS LP+L DV SD QD G ++ L+ DRD  
Sbjct: 660  DRVSRTQYQFSMSSPDAELLALWSDKLVHALSQLPELTDVASDLQDKGLQVYLVIDRDAA 719

Query: 714  SRLGIDVQAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRYSQDISALEKMFVINRDG 773
            SRLG+ V      L +AFGQRQISTIY   +QY+VV++     +    AL ++ V   DG
Sbjct: 720  SRLGVSVSTITDALYDAFGQRQISTIYTQASQYRVVLQAQSGETLGPEALNQIHVKTTDG 779

Query: 774  KAIPLSYFAQWRPANAPLSVNHQGLSAASTIAFNLPTGTSLSQATEAINRTMTQLGVPST 833
              + LS  A      A L++ H G   A  ++FNL  G +L +  E IN+T   +G+P  
Sbjct: 780  GQVRLSSLAHVEQRQAQLAIAHIGQFPAVMMSFNLAPGVALGKGVELINQTQKDIGMPVG 839

Query: 834  VRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALL 893
            V+  F G AQ F+ +++S L+LI+AA+ T+YIVLG+LYESY+HP+TILSTLPSA VGALL
Sbjct: 840  VQTQFQGAAQAFEASLSSTLLLILAAVVTMYIVLGVLYESYIHPITILSTLPSAAVGALL 899

Query: 894  ALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAIFQACLLRFRP 953
            AL L      +IA+IGI+LLIGIVKKNAIMM+DFAL+A+R+ GL P+ AI+QA LLRFRP
Sbjct: 900  ALLLSGNDLGMIAIIGIILLIGIVKKNAIMMIDFALDAERNQGLDPQTAIYQAALLRFRP 959

Query: 954  IMMTTLAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRL 1013
            I+MTTLAALFGA+PL+L+ G G+ELRQPLG+ +VGGL++SQ+LTL+TTPV+YL+FDRL  
Sbjct: 960  ILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLGR 1019

Query: 1014 RFSRK 1018
            R+ ++
Sbjct: 1020 RWRKE 1024