Pairwise Alignments

Query, 544 a.a., Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 531 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  117 bits (292), Expect = 1e-30
 Identities = 120/492 (24%), Positives = 218/492 (44%), Gaps = 44/492 (8%)

Query: 21  KLALVTCALTLVFTSSLFAASDTADGRTLKLAIGPEPTE--GFDPMLGWSHGSYLLLHAP 78
           K+AL   A   +   S  AA +   G TLK+   PEPT+    +   G        ++  
Sbjct: 10  KIALAAGAFVALPGGSFAAAEEPVSGGTLKIVYFPEPTQLVAINTSAGGPQFIGSKIYDG 69

Query: 79  LLKQNADMSWGNLLTEKVDTSPDGKIWTLTLKPGLKFSDGSPLTAEDVVFTY--NKAAKS 136
           LL  + ++S    L ++   S DG  +   L+P  KF DG P+T+ DV F+    K A  
Sbjct: 70  LLTYDYELSPKPSLAKEWSVSADGLEYVFHLQPNAKFHDGKPVTSADVEFSILRLKEAHP 129

Query: 137 GGKIDMGNFSHARALDARRIEMTLSHPQSTFVNVLGSLGIVPASRYDEKTF-------AR 189
            G+    N       +    ++ LS P    +  L S       ++  +TF         
Sbjct: 130 RGRATFANVESIDTSNPLVAKVKLSKPAPGLITALASSESPVVPKHIFETFKPTDNPKPA 189

Query: 190 EPIGAGPYRLVSFQPGQQLIVE--ANPWYAGKKNDFNRLVFVFLDEDNAYAAARSGQLGL 247
           + IG+GP+ L  + PG  +++E  AN W A +    +R++   +++  A AAA   + G 
Sbjct: 190 QIIGSGPFVLKEWVPGSHILLEKNANYWDAPRPY-LDRVIIRLINDAGARAAAL--ETGE 246

Query: 248 VRIAPSMAVAPQQDNLKLWVRDSVENRGIVFPMVPAGKKDANDYPVGNDVTADVAIRRAI 307
             I P+       + LK      V++R   +    AG+++     + ND   ++ +R+AI
Sbjct: 247 GDIGPNPVALADLERLKSIPTLKVDDRIYAY----AGQQNQLVINLENDYLKELKVRQAI 302

Query: 308 NYAINRKQLAEQVMEGHAIPAYSAVQ-GL-PWQNPSVIFSDGDIAKARAILEEAGWKINS 365
            +AI+   L + V+ G+A+P+ + +  GL  + NP + F+  D+A A  +L+EAG+    
Sbjct: 303 AHAIDVPALIDTVLYGYAVPSPTPISPGLAKFHNPDIGFAKFDVALAEKLLDEAGFP--- 359

Query: 366 AGVREKAGKEARLTLWYASGDSTRRDLAEAVRAMLQPLGIVVSLQSGSWETVERHMHANP 425
              R+  GK  R  L   +     +  ++ +   L  +GI   +Q   + T  + ++ + 
Sbjct: 360 ---RKDGGK--RFKLRVTTNPFNPQTYSDFIAQALSKIGIEADIQKFDFGTYVKVVYTDR 414

Query: 426 TLFGW--------GSLDP---MELFHHYSGKAAGVEYYNPGYYSNPAVEAHLKQAIDAPD 474
               W         + DP   ++  +       G+ + N  +Y+NP V+  L+ A   PD
Sbjct: 415 ---AWDLSVESLSNTFDPTAGVQRVYWSKNFKIGLPFSNASHYANPEVDRLLEAAAVEPD 471

Query: 475 WQKAIPFWQQVE 486
            +K   F+++ +
Sbjct: 472 IEKRAAFFKEFQ 483