Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1146 a.a., transcription-repair coupling factor from Pseudomonas sp. S08-1

 Score = 1271 bits (3289), Expect = 0.0
 Identities = 651/1137 (57%), Positives = 841/1137 (73%), Gaps = 7/1137 (0%)

Query: 9    LPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT-DQMV 67
            LP  AG Q   G L GAA +  VAE A       +L+  D Q+A RL +E+  F  D  V
Sbjct: 9    LPGAAGKQHW-GNLPGAALSLAVAEAASAAKRFTLLLTADSQSAERLQEELAFFAPDLPV 67

Query: 68   MNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPHSYLHGHA 127
            ++  DWETLPYD FSPHQ+IIS R++TLY+LP ++ GVL+VP+ T + R+ P  +L G  
Sbjct: 68   LHFPDWETLPYDVFSPHQDIISQRIATLYRLPEIKHGVLVVPIATALHRLAPTRFLLGSG 127

Query: 128  LVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDD 187
            L++  GQ+L  + +RA+L++AGYR VD V EHGE+A RGAL+DLFPMGS+ PYR+D FDD
Sbjct: 128  LLLDVGQKLDVEEMRARLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDTPYRIDLFDD 187

Query: 188  EIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQ 247
            EI++LR FD +TQR++++VE+I LLPA EFP +K A+  FR ++R+ F+V      IYQ 
Sbjct: 188  EIETLRTFDPETQRSVDKVESIRLLPAREFPLEKKAVTDFRGRFRERFDVDFRRCPIYQD 247

Query: 248  VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTLARFENRG 307
            ++ G  PAGIEY+ PLFF E    LF Y P +T V +   +E +AE+F  D   R+E+R 
Sbjct: 248  LASGITPAGIEYYLPLFFEET-GTLFDYLPGDTQVFSLPGIEQAAEQFWLDARNRYEDRR 306

Query: 308  VDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPDLAIQAQQ 367
            VDP RPLLPP  ++L V++ F+ LK WPR+ +  + +           + LPDLAIQA+ 
Sbjct: 307  VDPERPLLPPADIFLPVEDCFARLKNWPRVVVSQEDVEVGVGRERFDARPLPDLAIQAKA 366

Query: 368  KAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQDAGRYLMI 427
              PL ALR+F+E + G V+FS ES GRRE L ELLAR+K+ P  +    E  D+   L I
Sbjct: 367  SEPLAALRRFIEEYPGRVLFSAESAGRREVLLELLARLKLKPIEVAGWKEFTDSRERLAI 426

Query: 428  GAA--EHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVGQPVVH 485
              A  + G +  Q  +AL+ ES L G+RV +RR   +     D +I+NL EL  G PVVH
Sbjct: 427  CIAPLDEGLLLDQ--IALVAESPLFGQRVMQRRRREKSRDGGDNVIKNLTELREGAPVVH 484

Query: 486  LEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKL 545
            ++HGVGRY G+ T+E  G   E+L L YA +AKLYVPV+SLHLI+RY G  +  APLH+L
Sbjct: 485  IDHGVGRYLGLVTMEFDGQAAEFLALMYAEEAKLYVPVASLHLIARYTGSDDALAPLHRL 544

Query: 546  GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605
            G + W +A++KAAE+VRDVAAELLDIYA+RAA+EG+AFK     Y  F   FPFE TPDQ
Sbjct: 545  GSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPAADYATFSAGFPFEETPDQ 604

Query: 606  AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQH 665
              AI+AV  DM     MDRLVCGDVGFGKTEVAMRAAF+AV + +QVAVLVPTTLLAQQH
Sbjct: 605  QAAIDAVREDMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQH 664

Query: 666  YDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGL 725
            Y++FRDRFA+WPV +E++SRF+SAKE  + +A+ AEGKIDI+IGTHKLLQ DV+ +DLGL
Sbjct: 665  YNSFRDRFADWPVTVEVMSRFKSAKEVNEAVAKLAEGKIDIVIGTHKLLQDDVRFKDLGL 724

Query: 726  LIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785
             I+DEEHRFGVR KE++KA+R++VDILTLTATPIPRTLNMA+SGMRDLSIIATPPARRL+
Sbjct: 725  CIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLS 784

Query: 786  VKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845
            V+TFV E    V++EA+LRE+LRGGQVYYL+NDV+ I+K A  LA LVPEARI IGHGQM
Sbjct: 785  VRTFVMEQHDSVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAALVPEARIGIGHGQM 844

Query: 846  RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905
             ER+LERVM+DF+H+RFNVLV +TIIETGID+P+ANTI+IERAD FGLAQLHQLRGRVGR
Sbjct: 845  HERDLERVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQLRGRVGR 904

Query: 906  SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965
            SHHQAYA+LLTP  K MT DAQKRLEAIA+ +DLGAGF LATHDLEIRGAGELLG+ QSG
Sbjct: 905  SHHQAYAYLLTPPRKQMTEDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGDGQSG 964

Query: 966  SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025
             ++ +GF+LYME+LE AV A++ G +P+LE       EV LR+P+L+PDD++PDV++RL 
Sbjct: 965  QIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEVNLRVPALIPDDYLPDVHSRLI 1024

Query: 1026 FYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGG 1085
             YKRIASA +E+ L+E++VE+IDRFGLLP+  +NL+ +  L+ QA+KLGI+K++   +GG
Sbjct: 1025 LYKRIASAADEDGLKELQVEMIDRFGLLPEATKNLMRLTLLKLQAEKLGIKKIDAGPQGG 1084

Query: 1086 TIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQL 1142
             IEFA    VDP  LI L+Q  P  ++ +G T+ K    +   + R + +   +++L
Sbjct: 1085 RIEFAGDTSVDPLVLIKLIQSAPARYKFEGATQFKLQVPMERPEERFNTLEALLERL 1141