Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1159 a.a., transcription-repair coupling factor from Serratia liquefaciens MT49

 Score = 1895 bits (4908), Expect = 0.0
 Identities = 939/1143 (82%), Positives = 1036/1143 (90%)

Query: 6    RYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQ 65
            RY+LP +AGD RQLG+LTG+ACA   AEI ERH GPV+LIAPDMQNALRL DEI+QFTDQ
Sbjct: 16   RYSLPERAGDLRQLGQLTGSACAVECAEIVERHNGPVMLIAPDMQNALRLRDEIQQFTDQ 75

Query: 66   MVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPHSYLHG 125
            MV  L+DWETLPYDSFSPHQEIIS+RLS+LY LP+M RGV+I+PVNTLMQRVCPH +LHG
Sbjct: 76   MVTTLSDWETLPYDSFSPHQEIISARLSSLYHLPTMARGVIILPVNTLMQRVCPHKFLHG 135

Query: 126  HALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFF 185
            HALVMKKGQRLSRD LRAQL+ AGYR VDQVMEHGE+ATRGALLDLFPMGSE+PYR+DFF
Sbjct: 136  HALVMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPYRIDFF 195

Query: 186  DDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIY 245
            DDEIDSLR FD D QRTL EVEAINLLPAHEFPTDK AIELFRSQWR+ FEV+RDAEHIY
Sbjct: 196  DDEIDSLRTFDVDNQRTLNEVEAINLLPAHEFPTDKNAIELFRSQWREQFEVRRDAEHIY 255

Query: 246  QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTLARFEN 305
            QQVSKGT PAGIEYWQPLFFS+PLP LFSY P NTL+VNTG+LE +A+RF  D   R+E+
Sbjct: 256  QQVSKGTWPAGIEYWQPLFFSQPLPSLFSYLPENTLIVNTGNLENAADRFWLDVNQRYES 315

Query: 306  RGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPDLAIQA 365
            R VDPMRPLL P +LWLRVDELFSELK WPR+ LKT+ LP KA NTNL ++ LPDLA+QA
Sbjct: 316  RRVDPMRPLLAPPSLWLRVDELFSELKAWPRMALKTEELPAKAGNTNLDYRTLPDLAVQA 375

Query: 366  QQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQDAGRYL 425
            QQKAPLD LR+F ESF G +IFSVESEGRRE L +LL RIK++   I  LD+A+ AGRY+
Sbjct: 376  QQKAPLDNLRRFTESFDGSIIFSVESEGRRETLQDLLGRIKLSTALIQHLDQAEPAGRYM 435

Query: 426  MIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVGQPVVH 485
            M+GA+E GF+D  RN ALICESDLLGERV+RRR D+RRTIN D LIRNLAELH GQPVVH
Sbjct: 436  MVGASERGFLDGMRNRALICESDLLGERVSRRRQDNRRTINTDVLIRNLAELHPGQPVVH 495

Query: 486  LEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKL 545
            LEHGVGRY G+TTLEAGGIK EYL+L YA + KLYVPVSSLHLISRYAGGA+E+APLHKL
Sbjct: 496  LEHGVGRYVGLTTLEAGGIKAEYLILAYAGEDKLYVPVSSLHLISRYAGGADENAPLHKL 555

Query: 546  GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605
            GGDAW+RARQKAAE+VRDVAAELLDIYAQRAAK GFAFKH+REQYQLFC SFPFETTPDQ
Sbjct: 556  GGDAWTRARQKAAERVRDVAAELLDIYAQRAAKTGFAFKHNREQYQLFCQSFPFETTPDQ 615

Query: 606  AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQH 665
             QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN KQVAVLVPTTLLAQQH
Sbjct: 616  EQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQVAVLVPTTLLAQQH 675

Query: 666  YDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGL 725
            +DNFRDRFA WP+RIEM+SRFRSAKEQ Q++ +A +GK+DI+IGTHKLLQSD++ +DLGL
Sbjct: 676  FDNFRDRFATWPIRIEMMSRFRSAKEQQQVMDDAVDGKVDIIIGTHKLLQSDLRWKDLGL 735

Query: 726  LIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785
            LIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA
Sbjct: 736  LIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 795

Query: 786  VKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845
            VKTFVREYDSLVVREAILRE+LRGGQVYYLYNDVENI+KAAE+LAELVPEARIAIGHGQM
Sbjct: 796  VKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAEKLAELVPEARIAIGHGQM 855

Query: 846  RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905
            RER+LERVMNDFHHQRFNVLVCTTIIETGIDIP+ANTIIIERAD FGLAQLHQLRGRVGR
Sbjct: 856  RERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFGLAQLHQLRGRVGR 915

Query: 906  SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965
            SHHQAYA+LLTP+PKAM+TDA KRLEAIASLEDLGAGFALATHDLEIRGAGELLGE+QSG
Sbjct: 916  SHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSG 975

Query: 966  SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025
             M T+GFSLYMELLE+AVDALK GREPSLEDLTS QTEVELRMP+LLPDD+IPDVNTRLS
Sbjct: 976  QMTTVGFSLYMELLESAVDALKHGREPSLEDLTSNQTEVELRMPALLPDDYIPDVNTRLS 1035

Query: 1026 FYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGG 1085
            FYKRIASAKN+ ELEE+KVELIDRFGLLPD ARNLL  A LRQ AQKLGI+++EGNE+GG
Sbjct: 1036 FYKRIASAKNDAELEELKVELIDRFGLLPDAARNLLQSAALRQHAQKLGIKRIEGNERGG 1095

Query: 1086 TIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQLEEN 1145
             IEF EKN VDP +LIGLLQ  PQ +RLDGPT+LKF+ DL++R+ R+ +  + +    E+
Sbjct: 1096 FIEFGEKNRVDPGYLIGLLQSNPQIYRLDGPTKLKFMLDLTDRQKRLKFTEELLTAFREH 1155

Query: 1146 AIA 1148
             +A
Sbjct: 1156 TLA 1158