Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC99

 Score = 2185 bits (5662), Expect = 0.0
 Identities = 1096/1148 (95%), Positives = 1124/1148 (97%)

Query: 1    MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR 60
            MPE+ RYTLP KAG+QR LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 
Sbjct: 17   MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 76

Query: 61   QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH 120
            QFTDQMVMNLADWETLPYDSFSPHQ+IISSRLSTLYQLP+MQRGVLIVPVNTLMQRVCPH
Sbjct: 77   QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 136

Query: 121  SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY 180
            S+LHGHALVM+KGQRLSRDALR QLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE PY
Sbjct: 137  SFLHGHALVMEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 196

Query: 181  RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240
            RLDFFDDEIDSLR+FD D+QRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
Sbjct: 197  RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 256

Query: 241  AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL 300
             EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL+VNTG LE SAERFQADTL
Sbjct: 257  PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTL 316

Query: 301  ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPD 360
            ARFENRGVDPMRPLLPP++LWLRVDELFSELK WPR+QLKT+HLP KAAN NLGFQKLPD
Sbjct: 317  ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 376

Query: 361  LAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQD 420
            LA+QAQQKAPLDALRKFLESF GPV+FSVESEGRREALGELLARIKIAP+RI+RLDEA D
Sbjct: 377  LAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 436

Query: 421  AGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVG 480
             GRYLMIGAAEHGF+DT RNLALICESDLLGERVARRR DSRRTINPDTLIRNLAELH+G
Sbjct: 437  RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 496

Query: 481  QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA 540
            QPVVHLEHGVGRYAGMTTLEAGGI GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE+A
Sbjct: 497  QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 556

Query: 541  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600
            PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
Sbjct: 557  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 616

Query: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660
            TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV+NHKQVAVLVPTTL
Sbjct: 617  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 676

Query: 661  LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKL 720
            LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAE AEGKIDILIGTHKLLQSDVK 
Sbjct: 677  LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 736

Query: 721  RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780
            +DLGLLIVDEEHRFGVRHKERIKAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPP
Sbjct: 737  KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 796

Query: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840
            ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
Sbjct: 797  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 856

Query: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900
            GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
Sbjct: 857  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 916

Query: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960
            GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 917  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 976

Query: 961  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020
            EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
Sbjct: 977  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1036

Query: 1021 NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080
            NTRLSFYKRIASAK ENELEEIKVELIDRFGLLPDPAR LLDIARLRQQAQKLGIRKLEG
Sbjct: 1037 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1096

Query: 1081 NEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQ 1140
            NEKGG IEFAEKNHV+PAWLIGLLQKQPQH+RLDGPTRLKFIQDLSERKTRI+WVRQFM+
Sbjct: 1097 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1156

Query: 1141 QLEENAIA 1148
            +LEENAIA
Sbjct: 1157 ELEENAIA 1164