Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1148 a.a., transcription-repair coupling factor from Escherichia coli BL21

 Score = 2180 bits (5650), Expect = 0.0
 Identities = 1093/1148 (95%), Positives = 1122/1148 (97%)

Query: 1    MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR 60
            MPE+ RYTLP KAG+QR LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 
Sbjct: 1    MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60

Query: 61   QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH 120
            QFTDQMVMNLADWETLPYDSFSPHQ+IISSRLSTLYQLP+MQRGVLIVPVNTLMQRVCPH
Sbjct: 61   QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120

Query: 121  SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY 180
            S+LHGHALVMKKGQRLSRDALR QLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE PY
Sbjct: 121  SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180

Query: 181  RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240
            RLDFFDDEIDSLR+FD D+QRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
Sbjct: 181  RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240

Query: 241  AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL 300
             EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL+VNTG LE SAERFQADTL
Sbjct: 241  PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTL 300

Query: 301  ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPD 360
            ARFENRGVDPMRPLLPP++LWLRVDELFSELK WPR+QLKT+HLP KAAN NLGF+KLPD
Sbjct: 301  ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFEKLPD 360

Query: 361  LAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQD 420
            LA+QAQQKAPLDALRKFLESF GPV+FSVESEGRREALGELLARIKIAP+RI+RLDEA D
Sbjct: 361  LAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420

Query: 421  AGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVG 480
             GRYLMIGAAEHGF+D  RNLALICESDLLGERVARRR DSRRTINPDTLIRNLAELH+G
Sbjct: 421  RGRYLMIGAAEHGFVDKVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480

Query: 481  QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA 540
            QPVVHLEHGVGRYAGMTTLEAGGI GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE+A
Sbjct: 481  QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540

Query: 541  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600
            PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
Sbjct: 541  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600

Query: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660
            TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV+NHKQVAVLVPTTL
Sbjct: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660

Query: 661  LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKL 720
            LAQQHYDNFRDRFANWPVRIEM+SRFRSAKEQTQILAE AEGKIDILIGTHKLLQSDVK 
Sbjct: 661  LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720

Query: 721  RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780
            +DLGLLIVDEEHRFGVRHKERIKAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPP
Sbjct: 721  KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780

Query: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840
            ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
Sbjct: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840

Query: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900
            GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
Sbjct: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900

Query: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960
            GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960

Query: 961  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020
            EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS QTEVELRMPSLLPDDFIPDV
Sbjct: 961  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSHQTEVELRMPSLLPDDFIPDV 1020

Query: 1021 NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080
            NTRLSFYKRIASAK ENELEEIKVELIDRFGLLPDPAR LLDIARLRQQAQKLGIRKLEG
Sbjct: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080

Query: 1081 NEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQ 1140
            NEKGG IEFAEKNHV+PAWLIGLLQKQPQH+RLDGPTRLKFIQDLSERKTRI+WVRQFM+
Sbjct: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140

Query: 1141 QLEENAIA 1148
            +LEENAIA
Sbjct: 1141 ELEENAIA 1148