Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1165 a.a., transcription-repair coupling factor from Agrobacterium fabrum C58

 Score =  719 bits (1855), Expect = 0.0
 Identities = 437/1160 (37%), Positives = 656/1160 (56%), Gaps = 47/1160 (4%)

Query: 19   LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT--DQMVMNLADWETL 76
            +G +     A L+A++A R    V  +  D Q    L ++I  F   D  V+ L  W+ L
Sbjct: 19   IGNVPSGMEALLLADMA-RAGTSVAYVMSDGQRVADL-EQILGFVAPDIPVLTLPAWDCL 76

Query: 77   PYDSFSPHQEIISSRLSTLYQLPSMQR----GVLIVPVNTLMQRVCPHSYLHGHALVMKK 132
            PYD  SP  +  + RL+ L  L +  +     V++V VN ++Q++ P   +       + 
Sbjct: 77   PYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQKMAPRDVIESLGFSARP 136

Query: 133  GQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSL 192
            G ++  + + A+L+  G+  V  V E GE+A RG +LD+F  G+E+P RLDFF D ++S+
Sbjct: 137  GNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDTLESI 196

Query: 193  RLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSKGT 252
            R FD  +QRT+ +  +++L P  E       I  FR  +   F      + +YQ VS+G 
Sbjct: 197  RTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFGAATRDDALYQAVSEGR 256

Query: 253  LPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAER------FQADTLARFENR 306
              AG+E+W PLF+ E L   F Y     +V +  + E + ER      +     A  E +
Sbjct: 257  RYAGMEHWLPLFY-EQLETAFDYLKGFRIVTDHTAKEAAKERSKLVLDYYEARRASGETK 315

Query: 307  GVDPMRPLLPPEALWLRVDELFSE--------LKRWPRLQLKTDHLPEKAANTNLG--FQ 356
            G     P  P     + +D    E        ++  P  +  ++  P    + ++G  + 
Sbjct: 316  GSTQGAPYKPVSPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEGRPVATLDAHVGPRWA 375

Query: 357  KLPDLAIQAQQKAPLDALRKFL---ESFSGPVIFSVESEGRREALGELLARI---KIAP- 409
            + P      ++    D   K +    +    V+ +  SEG  + L ++L      KI P 
Sbjct: 376  RPPTEGDSEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRLLQVLNEHGLEKIKPV 435

Query: 410  ---KRILRLDEAQDAGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTIN 466
               K + +L + + A   L +   E GF      LA+I E D+LG+R+ RR   S+R   
Sbjct: 436  TSLKEVKKLGKGEAACAVLSL---EAGF--ETGTLAVIGEQDILGDRMVRR---SKRRKR 487

Query: 467  PDTLIRNLAELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSL 526
                I  +A L  G  VVH EHG+GR+ G+ T+EA G     L L YA+DAKL++PV ++
Sbjct: 488  GADFIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKLFLPVENI 547

Query: 527  HLISRYAGGAEESAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586
             L+SRY   A E A L KLGG AW   + K  +++ D+A EL+ I A R  +   A    
Sbjct: 548  DLLSRYGSDAAE-ATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHAPALIAP 606

Query: 587  REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646
               Y  F   FP++ T DQ  AI AV  D+     MDRL+CGDVGFGKTEVA+RAAFLA 
Sbjct: 607  DGLYDEFAARFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAA 666

Query: 647  ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDI 706
             N  QVAV+VPTTLLA+QH+  F +RF   P+R++  SR   +KE      E AEGK DI
Sbjct: 667  MNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVAEGKTDI 726

Query: 707  LIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMA 766
            ++GTH LL + +   +LGLLI+DEE  FGV+HKER+K +++DV +LTL+ATPIPRTL +A
Sbjct: 727  VVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLA 786

Query: 767  MSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAA 826
            M+G+R+LS+I TPP  R+AV+TF+  +D LV+RE ++RE  RGGQ +Y+   + ++    
Sbjct: 787  MTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLADLADIH 846

Query: 827  ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886
              L   VPE ++A+ HGQM   ELE +MN F+  +++VL+ TTI+E+G+D+PTANT+I+ 
Sbjct: 847  AFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVH 906

Query: 887  RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946
            RAD FGLAQL+QLRGRVGRS  +A+A    P  K +TT A++RL+ + SL+ LGAGF LA
Sbjct: 907  RADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGAGFQLA 966

Query: 947  THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006
            +HDL+IRGAG LLGEEQSG ++ +GF LY ++LE AV  +K   E  + D +    ++ +
Sbjct: 967  SHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEE--VRD-SGWSPQISV 1023

Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARL 1066
                ++P+D++PD++ R+  Y+R+    + +E++    E+IDRFG LP   ++LL I  +
Sbjct: 1024 GTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKIVYI 1083

Query: 1067 RQQAQKLGIRKLEGNEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLS 1126
            +   +   + K++   KG  ++F  K   +PA L+G + KQ    ++     L   +DL 
Sbjct: 1084 KSLCRTANVEKVDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSLFLNRDLP 1143

Query: 1127 ERKTRIDWVRQFMQQLEENA 1146
              + R+      M QL E A
Sbjct: 1144 TPEKRLTGAAMVMTQLAELA 1163