Pairwise Alignments

Query, 577 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 575 a.a., Single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. SCN45

 Score =  461 bits (1186), Expect = e-134
 Identities = 254/563 (45%), Positives = 358/563 (63%), Gaps = 20/563 (3%)

Query: 20  ADLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNAVEILYNAFREGTRIIVVGD 79
           A + PLL RL+A+RGVR+  EL+  +  +L    L G  +A  +L +A  +  R+ +V D
Sbjct: 19  AGVHPLLARLFAARGVRAKDELDDGLARLLSPDTLRGTHDAAVLLADAIAQDKRLCIVAD 78

Query: 80  FDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTVDNG 139
           +D DGAT+ A+ V G+R LG  N+SYLVP+R  DGYGL+P + ++  A GA +++TVDNG
Sbjct: 79  YDCDGATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPIAERVAASGADMLITVDNG 138

Query: 140 ISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAFYLM 199
           I+S  GVA AK  G+ V+VTDHHLPG  LP A+ ++NPN   CEF SKS+AGVGV FY++
Sbjct: 139 IASVEGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPGCEFESKSIAGVGVMFYVL 198

Query: 200 LALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIRAGK 259
           LALR+ LR +G FD      P L  LL LVALGTVADVV LDANNR L  QGL RIRAG 
Sbjct: 199 LALRSELRKRGVFD--TATQPKLDALLPLVALGTVADVVKLDANNRRLVAQGLRRIRAGA 256

Query: 260 CRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEARVLA 319
              G+ AL + ++R        D GFALGPR+NAAGRL DM++G+  LL D+ G A  LA
Sbjct: 257 MPAGVAALFKAASRHASAATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRAEELA 316

Query: 320 SELDALNQTRKEIEQGMQAEALILCEKLERSS------ETLPGGLAMYHPEWHQGVVGIL 373
             LD +N+ R++IE GM+ +AL+L E L  +          P  ++++   +H+GVVGI+
Sbjct: 317 RMLDGINRERRDIEGGMRDQALLLAESLFSNGTDGEGIAAPPPAISVFDAGFHEGVVGIV 376

Query: 374 ASRIKERFHRPVIAFAPAG----DGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGH 429
           ASRIK+RFHRP   FA +G    +  LKGSGRSI G H+RDAL+ +   +P ++++FGGH
Sbjct: 377 ASRIKDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDALDLVAKRHPGVLLRFGGH 436

Query: 430 AMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAG 489
           AMAAG ++    FE F++ F ++  E L  A L  ++ +DGP++   M +++   L    
Sbjct: 437 AMAAGCTVAREHFETFEKGFAQVARELLADAALTRQIETDGPIAREYMRIDLVDTLH-RE 495

Query: 490 PWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPDNGVRE 549
            WGQ F  P F     ++ QRLVGE+HL + +     G  +D + F+      P      
Sbjct: 496 VWGQGFAPPTFSEEVEVVSQRLVGEKHLSLKLR--HQGQPIDAMWFSHTEPLPP-----R 548

Query: 550 VELAYKLDINEFRGNRSLQIIID 572
           V+LA++LD +E++G R L+ +++
Sbjct: 549 VKLAFRLDADEWQGVRRLRFLVE 571