Pairwise Alignments

Query, 577 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 569 a.a., Single-stranded-DNA-specific exonuclease RecJ from Pseudomonas sp. DMC3

 Score =  652 bits (1681), Expect = 0.0
 Identities = 327/571 (57%), Positives = 425/571 (74%), Gaps = 4/571 (0%)

Query: 6   QLRRREADETAELPADLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNAVEILY 65
           ++  R+   T     DLPPLL RLYA+RGV+S  EL++S+  ++P+QQL GID AV++L 
Sbjct: 2   RIEPRQLPATLPFLGDLPPLLTRLYAARGVQSEAELDKSLARLIPFQQLKGIDAAVDLLV 61

Query: 66  NAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQA 125
            A  +  RI++VGDFDADGAT++ + VLG+R LG  ++ YLVPNRFE GYGL+PE+V+ A
Sbjct: 62  TALEQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVA 121

Query: 126 KARGAQLIVTVDNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFP 185
             R  QL++TVDNGISS  GVA AK  G+ V++TDHHLPGD LP A+A++NPN   CEFP
Sbjct: 122 LTREPQLLITVDNGISSVEGVAAAKRAGLKVLITDHHLPGDELPQADALVNPNQPGCEFP 181

Query: 186 SKSLAGVGVAFYLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNR 245
           SK+LAGVGV FY+++ALR  LR  GW++ +    PN+ ELLDLVALG+VADVVPLDANNR
Sbjct: 182 SKALAGVGVIFYVLMALRARLRSLGWYESK--PQPNIGELLDLVALGSVADVVPLDANNR 239

Query: 246 ILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVA 305
           IL  QGL RIRAG+ RPGIKA+LE++ R+  ++ ++DLGF +GPRLNAAGRLDDMS+G+ 
Sbjct: 240 ILVHQGLERIRAGRARPGIKAILEVAKREAARITSTDLGFIVGPRLNAAGRLDDMSLGIE 299

Query: 306 LLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEW 365
            LL  +   AR +A++LD +NQ RK IEQGMQ EAL   + L    E++P GL ++ PEW
Sbjct: 300 CLLTADANLAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLP--VESMPFGLCLFDPEW 357

Query: 366 HQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIK 425
           HQGV+GILASR+KER+ RP IAFA AGDG LKGSGRS+QG H+RDAL  +   +P+L+ K
Sbjct: 358 HQGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALSVVAAQHPNLIAK 417

Query: 426 FGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLL 485
           +GGHAMAAGL+L +  F  F + F   V   L    L G ++SDG L+  E  +E+A+ L
Sbjct: 418 YGGHAMAAGLTLPQENFPLFAEAFDAEVRRQLREEDLTGRMLSDGTLAVEEFHLELARAL 477

Query: 486 RDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPDN 545
           R AGPWGQ FPEPLF G F+L++QR+VGERHLKV+++   G   LDGIAF ID   WP+ 
Sbjct: 478 RHAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGIDRDVWPNP 537

Query: 546 GVREVELAYKLDINEFRGNRSLQIIIDDIWP 576
            ++ VELAYKLD+NEFRGN ++Q++I  I P
Sbjct: 538 TIQWVELAYKLDVNEFRGNETVQLMIAHIEP 568