Pairwise Alignments

Query, 577 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 573 a.a., Single-stranded-DNA-specific exonuclease RecJ from Alteromonas macleodii MIT1002

 Score =  613 bits (1582), Expect = e-180
 Identities = 309/561 (55%), Positives = 415/561 (73%), Gaps = 5/561 (0%)

Query: 16  AELPADLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNAVEILYNAFREGTRII 75
           A L +DL P++ R+Y  R + +  +LE  +KG+  +  L G+  A +IL NA  +  RII
Sbjct: 13  ASLSSDLHPVIDRIYRGRNIANLDDLENGLKGLTHFNVLKGMPQAAQILANAVVQNKRII 72

Query: 76  VVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVT 135
           +VGDFDADGATST++ +L +RA+G  N+ +LVPNRF+ GYGLS  +VD+A  +GA++IVT
Sbjct: 73  IVGDFDADGATSTSVCILALRAMGYHNVDFLVPNRFDFGYGLSVPIVDEAAKQGAEVIVT 132

Query: 136 VDNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVA 195
           VDNGIS   GV HAK+LG+ V+VTDHHLPGD LP A+AI+NPN   CEFPSK+LAGVGVA
Sbjct: 133 VDNGISCIDGVTHAKSLGMQVVVTDHHLPGDVLPPADAIVNPNQPGCEFPSKNLAGVGVA 192

Query: 196 FYLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRI 255
           FY+MLAL+  L+ +G F+   +APPNLA LLD+VA+GTVADVV LD NNRIL  QGL RI
Sbjct: 193 FYIMLALKAELQQQGHFERAGLAPPNLASLLDIVAVGTVADVVVLDKNNRILVHQGLQRI 252

Query: 256 RAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEA 315
           RAGKCRPGIKAL+E++NRD   L ++DLGF +GPRLNAAGRLDDMS G+A LL D   +A
Sbjct: 253 RAGKCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQGIACLLEDETIQA 312

Query: 316 RVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILAS 375
           R++A+ELDALN+ R+EIE GM+A+A I+ E++      +P  L +Y  ++HQGV+GI+A 
Sbjct: 313 RMIAAELDALNKERREIETGMKAQAEIVLEQMALDEGDMPSALVVYREDFHQGVIGIVAG 372

Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGL 435
           R+KE++ +PVIAFA   D  +KGS RSI G+H+RD L+ ++T YP ++ KFGGHAMAAGL
Sbjct: 373 RLKEKYLKPVIAFAHQDDEIIKGSARSIPGVHIRDVLDEVNTRYPGVIEKFGGHAMAAGL 432

Query: 436 SLEEHKFEQFQQRFGELVTEWLDPALLQGE--VISDGPLSAAEMSMEVAQLLRDAGPWGQ 493
           SL   K ++F+Q F ++    +  A L G   ++SDG LS+ E+ +  A LLR AGP+GQ
Sbjct: 433 SLPVAKLQEFEQAFVDIARAHM--AKLDGNHALLSDGDLSSKELCLPFAHLLRQAGPFGQ 490

Query: 494 MFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPDNGVREVELA 553
            F  PLFDG F LL QRLVG++HLK++++  G    +D IAFN+D   WP+  V+ V +A
Sbjct: 491 GFESPLFDGEFALLDQRLVGQKHLKMVLKSDGANE-VDAIAFNVDLKSWPNAMVKRVHIA 549

Query: 554 YKLDINEFRGNRSLQIIIDDI 574
           Y+LDIN FRG  ++Q+I++ I
Sbjct: 550 YRLDINVFRGQETVQLIVEQI 570