Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 348 a.a., ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 3/221 (1%)

Query: 25  ASAAMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLV 84
           A A +   A++       + GV ++       ++ G+ LG+   Y G  E  V+ Q+   
Sbjct: 32  AGAGLRGNASDVYVMNVMVSGVEYWFPVYEMMKQLGRTLGVKTRYTGTPEYDVNKQLASF 91

Query: 85  NNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLG 144
              + +    I++  ++PD     + RA   G+ ++T+ +D+    R+ +I     ++  
Sbjct: 92  EQELARKPAGILLHPMNPDPFIEPINRAAAMGIPVVTFAADSPNSKRTSFITSDNDREGT 151

Query: 145 SMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDA 204
                +AA    K +  V     +P   + ++ +     ++  +HPG ++V       D 
Sbjct: 152 QAADAIAASMGGKGEYAV---LENPGQDNHDRRIAAFINRMKTKHPGMKLVGRAASNQDP 208

Query: 205 TKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRN 245
            K+ Q    + +A P+L A+  P+AN+   AAQA    K+N
Sbjct: 209 NKAYQAVLSLAQANPNLGALFMPEANSALGAAQAKVETKKN 249