Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 319 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25

 Score = 80.9 bits (198), Expect = 4e-20
 Identities = 76/296 (25%), Positives = 131/296 (44%), Gaps = 11/296 (3%)

Query: 15  MIALLTAFGLASAAMTVQAAE-RIAFIPKLVGVGFFTSGGNGAQEAGK--ALGIDVTYDG 71
           + A   A  L+SA     AA+ ++  + K +   FF +  +GA+   K  A   D+  +G
Sbjct: 15  LAAASAALPLSSAFADDAAAKPKVGLVMKSLANEFFVTMQDGAKAYQKDHAADFDMITNG 74

Query: 72  -PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPE- 129
              E   S Q+ +VN  +    +AI+++      L   LK+A   G+K++  D+   P+ 
Sbjct: 75  IKNETDTSAQIDIVNQMILSKVNAIVIAPADSKALVTVLKKASDAGIKVVNIDNRLDPDV 134

Query: 130 CRSYYIN---QGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKIS 186
            +S  +N    G   + GS LV     +      KV      PT T+  Q  + A  K +
Sbjct: 135 LKSKNLNIPFVGPDNRKGSRLVGDYLAKQLASGDKVGIIEGVPTTTNAQQ--RTAGFKDA 192

Query: 187 QEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDAN-ALPAAAQAAENLKRN 245
            +  G +IV+TQ G  +  +  + A  ++  YPDL A++A + N AL A +      K  
Sbjct: 193 MDAAGMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAVSAVRAAGKAG 252

Query: 246 NLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSL 301
            + +VG+     ++P +Q G V         QQ    +  A  L+K   ++  D +
Sbjct: 253 KVLVVGYDNIEAIKPMLQDGRVLATADQAAAQQAVFGIQNALKLVKGEKVDSKDGV 308