Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 334 a.a., autoinducer 2 ABC transporter substrate-binding protein from Paraburkholderia sabiae LMG 24235

 Score = 94.0 bits (232), Expect = 5e-24
 Identities = 85/345 (24%), Positives = 142/345 (41%), Gaps = 16/345 (4%)

Query: 7   KMARHSIKMIALLTAFGLASAAMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKAL-GI 65
           K+ R S  +     A G+ +AA      E I  + K+ G+ +F     G +E  K   G+
Sbjct: 2   KLTRLSAALATGALALGVIAAAQAA-TNETIVTVVKVTGINWFNRMDEGVKEFAKDNPGV 60

Query: 66  DVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSD 125
                GP     + Q++++ + + +   AI V    P  L PALK+AM RG+K++T ++D
Sbjct: 61  QAYQTGPGRADAAQQLKIIEDLIAKKVTAIAVVPYDPPTLEPALKKAMDRGIKVVTHEAD 120

Query: 126 TKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKI 185
            +       I        G+ L E  A  + K+  K A    S     Q QW        
Sbjct: 121 NEKN-TMVDIEAFDNSAYGAGLNERLASCM-KQDGKWAVLVGSLGSRSQVQWADGGINNA 178

Query: 186 SQEHPGWEIVTTQF-GYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENL-K 243
             ++P   +V  +    ND  K+ + A+ +++ +PDL       +  +    +A E    
Sbjct: 179 KAKYPKMNLVEPKLETNNDGEKAYEVAKEVLRKHPDLKGFQGSSSLDVIGIGRAVEEAGL 238

Query: 244 RNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDI 303
           +  + + G   P     +++ G V     WD    G     VA  L+    +  G  L I
Sbjct: 239 QGKICVYGTGLPTEAGKFLESGAVNGIAFWDPKLAGLAMNKVAQMLVDGKTVQNGADLGI 298

Query: 304 PGIGKVTVSPNSEQGYHYEAKGNGIVLLPER-VIFNKDNIDKYDF 347
           PG  KVTV          +  G GI++  +  V  +K N  +Y+F
Sbjct: 299 PGYTKVTVE---------KGPGKGIIVRGQGWVNVDKSNYKQYNF 334