Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 335 a.a., rhamnose ABC transporter substrate-binding protein from Paraburkholderia sabiae LMG 24235

 Score =  176 bits (447), Expect = 6e-49
 Identities = 105/346 (30%), Positives = 182/346 (52%), Gaps = 18/346 (5%)

Query: 7   KMARHSIKMI--ALLTAFGLASAAMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKALG 64
           K  RH+  M+  A +    +A+AA  ++   +IAF+PK +   +     +G   A K   
Sbjct: 3   KPLRHAGAMMLCAAMLGVSVAAAAAGIKPDLKIAFVPKQINNPYEVIADDGGMAAIKEFK 62

Query: 65  IDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDS 124
                 GP++   S QV  +N    Q  DAI+++A   + L P LK+AM +G+K++T+DS
Sbjct: 63  GQGKVVGPSDAGASSQVSYINTLTTQRQDAIVIAANDANALVPYLKKAMSQGIKVVTFDS 122

Query: 125 DTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAK 184
           DT P+ R  ++NQ   + +G   +++ +  +  E  + A   ++P  T+QN W+K  + +
Sbjct: 123 DTAPDGRQLFVNQANAESIGRGQIQLVSKLMGGE-GEFAILSATPNATNQNTWIKWMQEE 181

Query: 185 ISQ-EHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQ-AAENL 242
           + + E+   ++V   +G +D  KS    +G+++AYP+L AI+AP +  + AAA+  + + 
Sbjct: 182 LKKPEYSKMKLVKIAYGNDDDQKSFVETQGLLQAYPNLKAIVAPTSVGIAAAARYISTSS 241

Query: 243 KRNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKN-MPMNVGDSL 301
            +  +A+ G  TPN MR +V+ GTVK F LWD  Q G ++ Y A +L    +    G+S 
Sbjct: 242 SKGKVAVTGLGTPNQMRAFVKNGTVKAFQLWDPGQLGYLAAYAAASLASGAITGKEGESF 301

Query: 302 DIPGIGKVTVSPNSEQGYHYEAKGNGIVLLPERVIFNKDNIDKYDF 347
           D   +GK T+    E            ++L     F+  NID ++F
Sbjct: 302 DAGKLGKRTIGAQGE------------IILGPPTTFDASNIDNFNF 335