Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 315 a.a., ABC transporter substrate-binding protein from Paraburkholderia sabiae LMG 24235

 Score = 70.1 bits (170), Expect = 7e-17
 Identities = 63/274 (22%), Positives = 115/274 (41%), Gaps = 8/274 (2%)

Query: 13  IKMIALLTAFGLASAAMTVQAAE---RIAFIPKLVGVGFFTSGGNGAQEA-GKALGIDVT 68
           +K +++L A  +  A  +V A      IA I K     ++ +   GA  A   A G  +T
Sbjct: 1   MKKLSILAAAAMTCAMFSVYAQAAGGEIAVIVKTANSNYWQNVQKGATAAMADAKGYTMT 60

Query: 69  YDGPT-EPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTK 127
           + GP  E +++ +V +V N VN+    I+++   PD L PA+K+A +  + ++  DS   
Sbjct: 61  FQGPAAESAIADEVNMVENAVNRHVAGIVLAPSDPDALVPAMKKAWEAHIPVVLIDSSVS 120

Query: 128 PECRSYYIN-QGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKIS 186
              + YY +   T       L   A      +  KVA     P    +   V   +  I+
Sbjct: 121 DSGKQYYQSFLSTDNAKAGELCAKAMIDRVGQNGKVAIMSYVPGAGSEVGRVGGFRKYIA 180

Query: 187 QEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLKRN 245
             H   ++V   +  +    +L     ++ A PDL  I  A +  A+       ++ K  
Sbjct: 181 -AHSKLQVVGPFYSQSQMANALNQTTDVLSANPDLKGIFGANEPTAVGMGRALQQSGKGG 239

Query: 246 NLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQG 279
            +  +GF     ++ +V+ GT++   +    Q G
Sbjct: 240 KVVAIGFDGNQDLQGFVRDGTIQAIAVQSSYQMG 273