Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 328 a.a., autoinducer 2 ABC transporter substrate-binding protein from Serratia liquefaciens MT49

 Score =  102 bits (255), Expect = 1e-26
 Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 11/303 (3%)

Query: 16  IALLTAFGLASAAMTVQ---AAER--IAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD 70
           +ALL A  +++  ++     AAE+  IA + K+ G+ +F     G  +A K L ++    
Sbjct: 5   LALLNACVVSACMLSTTPAFAAEKYEIAVVAKVTGIPWFNRMEVGVNDAAKKLDVNAYQT 64

Query: 71  GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPEC 130
           GP+ P  + QV+++ + + +  +AIIV       L P LK+A ++G+ +LT +S  + + 
Sbjct: 65  GPSTPDPAAQVKVIEDLIAKNVNAIIVVPNDAKVLEPVLKKAREKGIVVLTHESPDQ-QI 123

Query: 131 RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHP 190
             + I     ++     V+  A  +   K   A +  S TV   N W   A      ++P
Sbjct: 124 GQWDIETIDSEKYAQANVDELAKDMG-GKGGYAIYVGSLTVPLHNAWADSAIKYQKAKYP 182

Query: 191 GWEIVTTQFGYNDA-TKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQA-AENLKRNNLA 248
               VT++    ++  KS  T   ++K YP +  II   +     A QA A+   ++ +A
Sbjct: 183 DMFEVTSRLPVAESIDKSYATTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKDKIA 242

Query: 249 IVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGK 308
           +VG + P    PY+ RG +K+  LWD    G   V VA+ LL+     V   L I G+GK
Sbjct: 243 VVGIAMPAQAAPYLARGDIKKALLWDPKDAGYALVTVADQLLQG--KEVTKDLSIEGLGK 300

Query: 309 VTV 311
             V
Sbjct: 301 ADV 303