Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 328 a.a., Autoinducer 2-binding protein LsrB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  103 bits (258), Expect = 5e-27
 Identities = 90/338 (26%), Positives = 156/338 (46%), Gaps = 21/338 (6%)

Query: 10  RHSIKMIALLTAFGLASAAMTVQAAERIAF-IPKLVGVGFFTSGGNGAQEAGKALGIDVT 68
           R  I M++ L   G A  +  +QAAE++   I K+ G+ +F   G G  EAGKA G++ +
Sbjct: 5   RFVINMVSSLL-LGAALISAPLQAAEKVVVNISKVDGMPWFNRMGEGVVEAGKAFGVNAS 63

Query: 69  YDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKP 128
             GP+      QV+++ + + +  +AI +     + L P  K+A   G+ +LT +S  +P
Sbjct: 64  QVGPSSTDAPQQVKIIEDLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQP 123

Query: 129 ECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQE 188
              ++ I     ++  +  VE  A ++   K     +  S TV   N W  +   K  +E
Sbjct: 124 SA-NWDIEIIDNEKFAAEYVEHMAKRMG-GKGGYVIYVGSLTVPQHNLWA-DLLVKYQKE 180

Query: 189 H-PGWEIVTTQFGYNDAT-KSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAA-ENLKRN 245
           H P    VT +    ++   S +T   ++K YPDL A+++  +N    A +A  E   +N
Sbjct: 181 HYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKN 240

Query: 246 NLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPG 305
            +A+ G   P+     ++ G + E   +D    G     VA+ LLK   +  G  L++  
Sbjct: 241 KVAVYGMMIPSQAASLIKSGDITEGITYDPASAGYALAAVASTLLKGEEIKPG--LEMQN 298

Query: 306 IGKVTVSPNSEQGYHYEAKGNGIVLLPERVIFNKDNID 343
           +GK  V  +             I+   + ++ NKDNID
Sbjct: 299 LGKADVDMDKR-----------IIRFHKVLLVNKDNID 325