Pairwise Alignments

Query, 236 a.a., Integrase from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 395 a.a., Prophage integrase IntA from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  188 bits (478), Expect = 1e-52
 Identities = 106/221 (47%), Positives = 131/221 (59%), Gaps = 13/221 (5%)

Query: 4   YAISRGIIFNNPAAAIEARYITQATSRDVALTAEEIGILLRGIYTSNMNRRHKLALHLLI 63
           +AI RG    NPA  +    I +   RD ALT  EIG++ R +         + A+ LL+
Sbjct: 174 WAIERGQKVENPADLVRPASIAKFEPRDRALTPVEIGLMYRYMERVGTTPSIRAAVKLLL 233

Query: 64  ICMVRKSELIEATWSEVNFNALEWRIPGERMKMDNPHIVPLSKQALAMFEELKFLAGDSP 123
           + MVRKSEL  ATW+E+NF+   W IP ERMK  NPH+V LS+QA+ +   LK  AG S 
Sbjct: 234 LTMVRKSELTNATWNEINFSEALWTIPKERMKRRNPHLVFLSRQAMDIMIALKTFAGSSD 293

Query: 124 YVFPSRHGYRRPISKTTLNCAVRTLDLNVR----------DFVIHDFRRTASTLLHEQGY 173
           ++ PSR+    P+S  TLN   R L L  R           F  HD RRTASTLLHE GY
Sbjct: 294 FILPSRYDSDAPMSSATLN---RVLTLTYRLAQKEGESLPKFGPHDLRRTASTLLHEAGY 350

Query: 174 NSDWIEKYLAHKIGGVHGVYNRAEYLNQRREMLQSWADFVD 214
           N+DWIEK LAH+  GV  VYN+AEY  QR  MLQ WAD +D
Sbjct: 351 NTDWIEKCLAHEQKGVRAVYNKAEYREQRASMLQDWADMID 391