Pairwise Alignments

Query, 321 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 321 a.a., L-arabinose ABC transporter permease AraH from Pseudomonas fluorescens SBW25

 Score =  211 bits (538), Expect = 1e-59
 Identities = 114/313 (36%), Positives = 185/313 (59%), Gaps = 8/313 (2%)

Query: 9   RRYFTKAWLLEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVIL 68
           +R F   W++    L+A L +  + +    NF +  N+  +    S   I A  M   + 
Sbjct: 16  QRKFLDDWVM----LLAALGIFLLSALFIDNFLSPLNMRGLGLAISTVGIAACTMLFCLA 71

Query: 69  TSGIDLSVGSLLALTGAVAASIVGVEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFI 128
           +   DLSVGS++A  G VA  ++    +  + V+AALA+G  +G + G+++AK R+ A I
Sbjct: 72  SGHFDLSVGSVIACAGVVAGIVIRDTDSVALGVSAALAMGLVVGLINGIVIAKLRINALI 131

Query: 129 ATLVMMLLLRGVTMVYTDGSPVNTGFTDNADLFGWFGIGRPLGVPTPVWIMAIVFIAAWY 188
           ATL  M ++RG+  +++ G  V  G  D    F  FG G+ LGVP P+ I  + F+   +
Sbjct: 132 ATLATMQIVRGLAYIFSSGKAV--GMMDEG--FFVFGNGQLLGVPVPIIITVLCFVFFGW 187

Query: 189 MLHHTRLGRYIYALGGNEAATRLSGISVSKVKIIVYSLCGLTASLAGIIEVARLSSAQPT 248
           +L++T  GR   A+GGN+ A  L+G++V + KII++++ GL  +LAG+I  +R++S QP 
Sbjct: 188 LLNYTTYGRNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGLVGALAGVILASRMTSGQPM 247

Query: 249 AGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAV 308
            G G+EL  I+A VLGG SL+GG G I   + G LIL  + N +NL  + ++YQ +++  
Sbjct: 248 IGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGS 307

Query: 309 VILLAVLVDNKKQ 321
           ++LLAV++D  KQ
Sbjct: 308 ILLLAVIIDRMKQ 320