Pairwise Alignments

Query, 1169 a.a., Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 787 a.a., Type I restriction enzyme EcoAI R protein from Pseudomonas putida KT2440

 Score =  164 bits (414), Expect = 3e-44
 Identities = 177/638 (27%), Positives = 283/638 (44%), Gaps = 134/638 (21%)

Query: 234 KRTLELNEEESRFLIDAQLRKAGWQADSKTLRFAKGARPEPGVNKAIAEWPTGTDETGKT 293
           K++L   +  S+++  A ++ AGW          K  R E    K            G+ 
Sbjct: 3   KKSLSERDICSKYIAPA-IQHAGWDMH-------KQVREEVSFTKGRIMVRGKLHSRGEA 54

Query: 294 GFADYVLFIGLK-PIAVVEAKRKNTDVSSKLNESYRYSKYFDNGFLRDTLLEHYAPDEVH 352
             AD++L+     PIAV+EAK     V S + ++  Y++  D                  
Sbjct: 55  RRADFILYHQANLPIAVIEAKDNKHSVGSGMQQALGYAEALD------------------ 96

Query: 353 DAVPEYEISWQDTSGKQRFKIPFCYSTNGREYRAAMKTKSGIWYRDVRHTTNMSKALPEW 412
                               +PF +S+NG  +      +SG    D +  T +S  L ++
Sbjct: 97  --------------------VPFVFSSNGDGF--LFHDRSGT---DSKVETELS--LDQF 129

Query: 413 HRPEEL----LDMLGSDPQKQNQ----WFAENPGMSELGLRYYQEDAVRAVEQAIVNGQQ 464
             P EL        G D   Q++    ++ +  G      RYYQ +A+    +A+  GQ 
Sbjct: 130 PSPAELWHRYCQWKGLDNAVQHKIEAPYYDDGSGRMP---RYYQMNAINRTVEAVARGQD 186

Query: 465 HILLAMATGTGKTRTAIALMFRLIQSQRFKRVLFLVDRRSLGEQALGAFEDTRINGDTFN 524
            +LL MATGTGKT TA  +++RL +S++ KR+LFL DR  L +Q      D +  G    
Sbjct: 187 RVLLVMATGTGKTYTAFQIIWRLWKSKQKKRILFLADRNILVDQTKN--NDFKPFGQAMT 244

Query: 525 SIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVGR------YDCIVVDEAHRG 578
            I        +  + S +I++    SL +    ++E M V +      +D IV+DE HRG
Sbjct: 245 KI------ARRQIDTSYEIYL----SLYQAVTGAEEEMNVYKQFSRDFFDLIVIDECHRG 294

Query: 579 YILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP----ALHTVDIFGEPVY 633
              +                 SA+R IL +F +A  + LTATP     + ++  FGEPVY
Sbjct: 295 SAAED----------------SAWREILGYFSNATHVGLTATPKETKEVSSITYFGEPVY 338

Query: 634 RYTYRTAVIDGYLIDQDPPIQIVTRNAQDGVYLSEGEQVER--LNPQGELINDTLADDQD 691
            YT +  + DG+L     P ++V  +    +   +G +  +  L+  GELI D +     
Sbjct: 339 SYTLKQGIEDGFL----APYKVVRIDFDKDL---QGWRPPKGMLDKNGELIEDRI----- 386

Query: 692 FEVADFNRGLVIPAFNRAVCGELTKYLDPTGQ-QKTLVFCVTNAHADMVVDEL------R 744
           + + D +R LVI    + V  ++T++L  +   QKT+VFC    HA+ +   L      R
Sbjct: 387 YNLKDMDRTLVIETRTQLVAQKVTEFLKASDPFQKTIVFCDDINHAERMRQALVNLNPER 446

Query: 745 SAFKKKYPQLEHDAIIKITGDADKDAKKVQSMIVRFNKERLPNIVVTVDLLTTGVDIPSI 804
            A  +KY       +++ITGD  +   ++ + I    +ER P I  T  L+TTGVD  + 
Sbjct: 447 VAENRKY-------VMRITGDDQEGKAELDNFI--NPEERYPVIATTSKLMTTGVDAQTC 497

Query: 805 CNIVFLRKVKSRILYEQMKGRATRLCPSVGKTSFKIFD 842
             IV  + +KS   ++Q+ GR TR+    GK  F I D
Sbjct: 498 KLIVLDQHIKSMTEFKQIIGRGTRINEDFGKYWFTIMD 535