Pairwise Alignments

Query, 1169 a.a., Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 810 a.a., DEAD/DEAH box helicase from Escherichia coli ECRC99

 Score =  160 bits (406), Expect = 3e-43
 Identities = 163/625 (26%), Positives = 261/625 (41%), Gaps = 138/625 (22%)

Query: 306 PIAVVEAKRKNTDVSSKLNESYRYSKYFDNGFLRDTLLEHYAPDEVHDAVPEYEISWQDT 365
           P+AV+EAK    ++   + +   Y++  D                               
Sbjct: 71  PLAVIEAKANKHEIGKGMQQGIEYARLLD------------------------------- 99

Query: 366 SGKQRFKIPFCYSTNGREYRAAMKTKSGIWYRDVR----HTTNMSKALPEWHRPEELLDM 421
                  +PF ++TNG           G  +RD              L ++  P EL   
Sbjct: 100 -------VPFVFATNG----------DGFIFRDATAAEGECLEKQITLDDFPSPAELWQK 142

Query: 422 L--------GSDPQKQNQWFAENPGMSELGLRYYQEDAVRAVEQAIVNGQQHILLAMATG 473
                       P     ++ +  G S    RYYQ  A+    +A+ NGQ  +LL MATG
Sbjct: 143 FCLWKGYTQAQLPVITQDYYDDGSGKSP---RYYQLQAINKTIEAVSNGQNRVLLVMATG 199

Query: 474 TGKTRTAIALMFRLIQSQRFKRVLFLVDRRSLGEQALG------AFEDTRINGDTFNSIF 527
           TGKT TA  +++RL +S+  KR+LFL DR  L +Q             T+++G T +  +
Sbjct: 200 TGKTYTAFQIIWRLWKSKNKKRILFLADRNILVDQTKNNDFQPFGTAMTKVSGRTIDPAY 259

Query: 528 DIKGLTDKFPEDSTKIHVATVQSLV--KRTLQSDEPMPVGRYDCIVVDEAHRGYILDKEQ 585
           +              IH+A  Q++   +   ++ + +    +D IV+DE HRG   +   
Sbjct: 260 E--------------IHLALYQAITGPEEDQKAFKQVAPDFFDLIVIDECHRGSASED-- 303

Query: 586 TEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP----ALHTVDIFGEPVYRYTYRTA 640
                         SA+R ILD+F  A +I LTATP     + + D FG+PVY Y+ +  
Sbjct: 304 --------------SAWREILDYFSSATQIGLTATPKETHEVSSTDYFGDPVYVYSLKEG 349

Query: 641 VIDGYLIDQDPPIQIVTRNAQDGVYLSEGEQVERLNPQGELINDTLADDQDFEVADFNRG 700
           + DG+L     P ++V       V +    Q  R       +N  + DD+ +   DF+R 
Sbjct: 350 IEDGFL----APYKVVR------VDIDVDLQGWRPTKGQTDLNGEVIDDRIYNQKDFDRT 399

Query: 701 LVIPAFNRAVCGELTKYLDPTG-QQKTLVFCVTNAHADMVVDELRSAFKKKYPQ---LEH 756
           +VI      V   +T YL  T    KT+VFC    HA    + +R A     P+      
Sbjct: 400 MVIDERTELVARTITDYLKRTNPMDKTIVFCNDIDHA----ERMRRALVNLNPEQVKKND 455

Query: 757 DAIIKITGDADKDAKKVQSMIVRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVKSR 816
             ++KITGD +    ++ + I    K+  P I  T +L+TTGVD  +   +V  + ++S 
Sbjct: 456 KYVMKITGDDEIGKAQLDNFI--NPKKPYPVIATTSELMTTGVDAKTCKLVVLDQNIQSM 513

Query: 817 ILYEQMKGRATRLCPSVGKTSFKIFD---CVDIYSSLESVDTMRPVVVRPQVELQTLVNE 873
             ++Q+ GR TR+    GK  F I D     ++++  E  D +      P+  + T   +
Sbjct: 514 TKFKQIIGRGTRIDERYGKLWFTILDFKKATELFAD-ERFDGI------PEKVMDTTPED 566

Query: 874 ITDSETYKTIEADGRSFAEHSHEQL 898
           I D E+    E      +EH  EQ+
Sbjct: 567 IADPES--DFEEKLEEISEHDDEQV 589