Pairwise Alignments

Query, 1169 a.a., Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1150 a.a., Type-1 restriction enzyme R protein from Alteromonas macleodii MIT1002

 Score =  786 bits (2030), Expect = 0.0
 Identities = 473/1192 (39%), Positives = 686/1192 (57%), Gaps = 91/1192 (7%)

Query: 4    SNFDFLKGVNDFIYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGQLLDIPACEN--Q 61
            SNF+FLK    + Y +A +AE N+  DPNTTLIKMR  GEA A ++   + +   +   Q
Sbjct: 5    SNFEFLKAHGVWFYNLAASAERNFSSDPNTTLIKMRQLGEAIAHNIAARVGVEFGKEVTQ 64

Query: 62   HDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLD-DAQMCLRLGFRLSVWYYRL 120
            H+LL++L     ++ ++   F+ L+ +GN A HEF +    DA   L +G  L+ W++  
Sbjct: 65   HNLLKDLDYTLRLESNVREAFYDLKSLGNSATHEFDSSTHRDALKALIIGHSLASWFHST 124

Query: 121  V--TKDYDFPVPMFVLPEHGENLYHQ-----EVLTLKQQLERQAQEKVQSQAELE----- 168
                K   F    FV PE   +   Q       +T++ Q      +  +  +++E     
Sbjct: 125  FGGEKAKGFNKSKFVKPEDPSDYVRQLEEKLSQITIESQRTSDRIKVAEKLSQIEHDKAE 184

Query: 169  AQQQRLVALNGYIAILEGKQQETEAQTKARLAALEAQLAAKDAELAKQTEQERKAYHKEI 228
            A++ R   +     I E    E E       A +E +          Q ++++ A  + I
Sbjct: 185  AERLRAERMAEEREIWEQLAHEQEEALANYRAEVERENKVNFDHFKAQPKEQQAAELQRI 244

Query: 229  TDQAVKRTLELNEEESRFLIDAQLRKAGWQADSKTLRFAKGARPEPGVNKAIAEWPTGTD 288
                 K   E++E E+R +ID QL  AGW+AD++ LR++KGARPEP  N+AIAEWPT + 
Sbjct: 245  E----KSHFEMDEAETRVIIDQQLIDAGWEADTENLRYSKGARPEPNKNRAIAEWPTDS- 299

Query: 289  ETGKTGFADYVLFIGLKPIAVVEAKRKNTDVSSKLNESYRYSKYFDNGFLRDTLLEHYAP 348
                 G ADY LFIG   +AVVEAK+   +V   ++++ RY+K   +  L D +      
Sbjct: 300  -----GPADYALFIGTTLVAVVEAKKNARNVYGAIDQAKRYAKGISS--LADNI------ 346

Query: 349  DEVHDAVPEYEISWQDTSGKQRFKIPFCYSTNGREYRAAMKTKSGIWYRDVRHTTNMSKA 408
                  V EY            FK+P  ++TNGR Y   ++ +SGIW+ DVR TTN  KA
Sbjct: 347  -----EVTEYG----------EFKVPLTFATNGRAYLKQLEQESGIWFLDVRDTTNRRKA 391

Query: 409  LPEWHRPEELLDMLGSDPQKQNQWFAENPGMSELGLRYYQEDAVRAVEQAIVNGQQHILL 468
            L  W+ P+++   L   PQK N    E     EL LR YQ+ A+++VEQAI + ++  L+
Sbjct: 392  LKGWYSPQKIKTYLRQTPQKANAQLDEMGFEYELQLRDYQKKAIQSVEQAIKDEKERALV 451

Query: 469  AMATGTGKTRTAIALMFRLIQSQRFKRVLFLVDRRSLGEQALGAFEDTRI-NGDTFNSIF 527
            AMATGTGKT+T IAL++RL++++RF+R+LFLVDR +LG QA   F + R+ N +TF   F
Sbjct: 452  AMATGTGKTKTCIALVYRLLKAERFRRILFLVDRSALGVQATIDFGEVRMENLNTFADTF 511

Query: 528  DIKGLTDK-----FPEDSTKIHVATVQSLVKRTLQSDEPMP---VGRYDCIVVDEAHRGY 579
            D+ G+  +      P+D TK+HVATVQ LVKR +   E      VG+YDCIVVDE HRGY
Sbjct: 512  DVLGMEPEKNPKPTPDDDTKVHVATVQGLVKRIMYPSEDATKPGVGQYDCIVVDECHRGY 571

Query: 580  ILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVDIFGEPVYRYTYRT 639
            +LD+E +E E++FR Q DYVS YR ++D+FDA KI LTATPA+HT DIFG+PV+ Y+Y  
Sbjct: 572  LLDRELSETEVKFRDQQDYVSKYRAVIDYFDAFKIGLTATPAIHTTDIFGDPVFSYSYTE 631

Query: 640  AVIDGYLIDQDPPIQIVTRNAQDGVYLSEGEQVERLNPQG---ELINDTLADDQDFEVAD 696
            AVIDGYL+D  PP++I T+   DG++ +  E+V+  +PQ    ELI+    D+ DF+VA 
Sbjct: 632  AVIDGYLVDHLPPVRIHTKLNTDGIHYNVNEEVQVYDPQTNQLELIH--TPDELDFDVAQ 689

Query: 697  FNRGLVIPAFNRAVCGEL--TKYLDPTGQQKTLVFCVTNAHADMVVDELRSAFKKKYPQL 754
            FNR ++ P F +A+   L  +  +DP  Q+KTL+FCVT+ HAD +V+ L+ A +  +  +
Sbjct: 690  FNRKVIAPEFTKAIAKWLIESDSIDPYSQEKTLIFCVTDKHADEMVEALKDACEHYHGAV 749

Query: 755  EHDAIIKITGDADKDAKKVQSMIVRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVK 814
            + DAI+KITG +DK  +    +I R+  +RLPNIVVTVDLLTTGVD+PSICN+VF+R+V 
Sbjct: 750  DDDAIMKITGASDKPLQ----LIRRYKNDRLPNIVVTVDLLTTGVDVPSICNLVFMRRVN 805

Query: 815  SRILYEQMKGRATRLCPSVGKTSFKIFDCVDIYSSLESVDTMRPVVVRPQVELQTLVNEI 874
            SRILYEQM GRATR C  + K  F+I+D VDIY  LE V+TM+PVV    +    L +EI
Sbjct: 806  SRILYEQMLGRATRRCDDIAKERFRIYDAVDIYKQLEKVNTMKPVVTNVDITFSKLESEI 865

Query: 875  TDSETYKTIEADGRSFAEHSHEQLVAKLQRIIGLAIYNRDRSEAVDKQVRRLDELCLDAA 934
             + +  K          E + +Q ++KLQ         R  +E+   +  R+        
Sbjct: 866  KEGKDSK--------LQELARDQFLSKLQS------KKRYLTESQQSEFERI-------V 904

Query: 935  GVNFGGLASRLREKGPHWSAEIFNKLPGFIARLERLTTDINALREAPIFLDIDDEVVSVK 994
            G      A  L+ K  H  A+ F   PG    L+             +  + +DEV+   
Sbjct: 905  GKPPQEFAQELKAKPVHEVADWFLNNPGLGELLDMKVKGTGGFTRI-VISEHEDEVLDTS 963

Query: 995  SLYGDYDTPQDFLEAFDALVQHAPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEES 1054
            + YG    P+D+L AF+  V    N   A+Q VI RP +LTR+ L +L    ++  F E 
Sbjct: 964  TGYGSGQKPEDYLTAFNDFVNANSNRMVAIQTVIQRPWELTRESLKQLALELEKNEFREE 1023

Query: 1055 SLRSAWKATRNEDIAARLIGHIRRAAVGDALKPFDERVDHALARIKAENDWSDEQINWLD 1114
             L++AWK  RNEDIAAR+IG+IR+AA+G+AL P+++RVD AL RI A   W   Q +WL 
Sbjct: 1024 DLKAAWKEVRNEDIAARIIGYIRQAAIGEALIPYEQRVDRALDRILASQPWKTPQRDWLS 1083

Query: 1115 RLAQALKEKVVLDDDVFKTGNFHRR-GGKPMLQRTFDDNLDSVLDKFSDYIW 1165
             +A+ +K  +++D+     G F +R GG     R FD  +  +L +F+  +W
Sbjct: 1084 TIAKQMKANIIVDEANLNEGIFKQRLGGINRANRLFDQPITDILAQFNRALW 1135