Pairwise Alignments

Query, 452 a.a., Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 438 a.a., restriction endonuclease subunit S from Cellulophaga baltica 18

 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 79  GAGSTEYYVLRSINGLINPHWLFALVKT----KDFLTNGALNMSGSVGHKRVTKEFLENY 134
           G  S +Y V   I+   + +++  L++     K F  +G       +G  R   +   N+
Sbjct: 324 GVISPDYRVFNLIHNSCDKYYILLLLQLGYRHKIFYAHG--QGVSMLGRWRFPADNFNNF 381

Query: 135 GVPVPPLAEQKVIAEKLDTLLAQVDSTKARLEQIPQILKRFRQSVIVAAVNGQL 188
             P+PPL+EQK I++ ++T   ++++     +Q  + LK ++ S+I + V G++
Sbjct: 382 RFPIPPLSEQKEISDYIETASQKIETAIGLKQQEIEKLKEYKSSLINSVVTGKV 435



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 133 NYGVPVPPLAEQKVIAEKLDTLLAQVDSTKARLEQIPQILKRFRQSVIVAAVNGQLTKEL 192
           N+   +PPL+EQ  IA+ LD    ++D   A  EQ   +LK  +Q +I  AV   L   +
Sbjct: 171 NFRAIIPPLSEQTKIAQFLDDKTTKIDDAIAIKEQQISLLKERKQILIHKAVTRGLDDSV 230

Query: 193 HKKNKFKLTELNISIPSLWKISEI 216
             K+     E   +IP  W++  +
Sbjct: 231 TLKDSG--VEWIGAIPEHWEVKRL 252



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 14/225 (6%)

Query: 207 IPSLWKISEIGQFADVKG--GKRLPKGESLIAENTGFPYIRAGQLKNGTVLPEGQLYLEE 264
           IP  W + ++  F  V G  G R      L++++ G   I    +    ++ +   YL  
Sbjct: 24  IPLNWNLQKLKSFLTVHGRIGFRGYTVNDLVSKDEGAVTISPSNMGENNMIWDKVSYLSW 83

Query: 265 YIQKSISRYTVSSGDLYITIVGACIGDAGIIPDVYNNANLTENAAKICNLNENIFNRFLS 324
                     V  GDL I +  A +G    + ++   A +      + N+  N    F  
Sbjct: 84  QKYYESPEIIVEEGDLLI-VKTASVGKIAYVRELKEKATINPQILILKNVKIN--KDFFY 140

Query: 325 LWLRSSYLQDIINSEIKSGAQGKLALARIKSLPLILPPLQEQHEIVRRVEQLFAYADTI- 383
             L S   Q  + +E        ++  +I +   I+PPL EQ +I + ++      D   
Sbjct: 141 YQLLSRVFQHQLETEKIGSTIYTISETKILNFRAIIPPLSEQTKIAQFLDDKTTKIDDAI 200

Query: 384 ---EKQVNNALTRVNSLTQSILAKAFRGELT-----AQWRAENPE 420
              E+Q++    R   L    + +     +T      +W    PE
Sbjct: 201 AIKEQQISLLKERKQILIHKAVTRGLDDSVTLKDSGVEWIGAIPE 245