Pairwise Alignments

Query, 460 a.a., predicted repair protein (NCBI) from Escherichia coli BW25113

Subject, 455 a.a., DNA repair protein RadA from Pseudomonas fluorescens GW456-L13

 Score =  577 bits (1488), Expect = e-169
 Identities = 288/454 (63%), Positives = 359/454 (79%), Gaps = 4/454 (0%)

Query: 1   MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGV 60
           MAKA KR + C ECG+ +P+W GQC  C AWNT+TE  + +    A + R +G+AG    
Sbjct: 1   MAKA-KRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGR-TGWAGQQ-- 56

Query: 61  AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120
           A+++ L+++S+EE+PRFST   E DRVLGGG+V GS +LIGG+PG GKST+LLQTLC LA
Sbjct: 57  AQIKTLAEVSVEEIPRFSTASSELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLA 116

Query: 121 QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQ 180
           + M  LYVTGEES QQVAMRA RLGLP D L +++ET IE I   A +E+PK+MVIDSIQ
Sbjct: 117 KSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIEAIIATARQEKPKVMVIDSIQ 176

Query: 181 VMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS 240
            +    +QS+PG V+QVRE+AA L R+AK  G AI +VGHVTK+G+LAGP+VLEH +D  
Sbjct: 177 TIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTV 236

Query: 241 VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSV 300
           +  +G++D R R LR+ KNRFGAVNELGVF MT++GL+EVSNPSAIFL+R  E   GS V
Sbjct: 237 LYFEGESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVV 296

Query: 301 MVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFV 360
           M  WEGTRP+LVE+QALVD S +ANPRRV +GL+QNRLA+LLAVLHRHGG+   DQDVF+
Sbjct: 297 MATWEGTRPMLVEVQALVDDSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFL 356

Query: 361 NVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAA 420
           NVVGGVKV ET++DLAL+ A++SSLR+RPLP DL+VFGEVGL+GE+RPVPSGQER+ EAA
Sbjct: 357 NVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEVRPVPSGQERLKEAA 416

Query: 421 KHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDAL 454
           KHGF+RAIVP  N PK+AP G+QI  V +L  AL
Sbjct: 417 KHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQAL 450