Pairwise Alignments

Query, 201 a.a., periplasmic protein (NCBI) from Escherichia coli BW25113

Subject, 273 a.a., conserved exported protein of unknown function from Pseudomonas putida KT2440

 Score = 60.5 bits (145), Expect = 3e-14
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 6/149 (4%)

Query: 54  MDDSAITAKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVT 113
           + D+ +   ++ AL  +  + S  I V+ D K   LSG VE++ + + A  VA+   G+ 
Sbjct: 26  VQDARLEGALQTALSLNRMLDSFRIKVEVDGKQARLSGEVENEVERQLAEDVARATRGIE 85

Query: 114 SVSDKLHVRDA---KEGSVKGYAG---DTATTSEIKAKLLADDIVPSRHVKVETTDGVVQ 167
            V + L +      +   ++ YA    D    + I+A+LL         ++V++++GVV 
Sbjct: 86  QVENLLQLNAQLVERPQELRAYAQRLEDVTLAAVIRARLLWSRTTEKAPIEVQSSEGVVT 145

Query: 168 LSGTVDSQAQSDRAESIAKAVDGVKSVKN 196
           L G VDS    + A  +A+  DGV  V N
Sbjct: 146 LRGKVDSAEAKELAGVVARTTDGVYLVNN 174



 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 9/154 (5%)

Query: 54  MDDSAITAKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVT 113
           ++D  + A ++A L+     +   I V++ + VVTL G V+S    E A  VA+  +GV 
Sbjct: 111 LEDVTLAAVIRARLLWSRTTEKAPIEVQSSEGVVTLRGKVDSAEAKELAGVVARTTDGVY 170

Query: 114 SVSDKLHV--------RDAKEGSVKG-YAGDTATTSEIKAKLLADDIVPSRHVKVETTDG 164
            V++ + +        R+   G+  G    D+    +I++       +   ++KV +  G
Sbjct: 171 LVNNLVSLDTAAMAKARETPAGAPIGPQPSDSWIIDKIQSSYRFSRNLDGLNLKVASEAG 230

Query: 165 VVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDL 198
           +V+LSG V S  Q   A  IA+ + GV+ V  DL
Sbjct: 231 MVRLSGEVVSAEQKTIAVEIARQIIGVRGVDADL 264



 Score = 35.8 bits (81), Expect = 7e-07
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 135 DTATTSEIKAKLLADDIVPSRHVKVETTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSV 194
           D      ++  L  + ++ S  +KVE      +LSG V+++ +   AE +A+A  G++ V
Sbjct: 28  DARLEGALQTALSLNRMLDSFRIKVEVDGKQARLSGEVENEVERQLAEDVARATRGIEQV 87

Query: 195 KNDLK 199
           +N L+
Sbjct: 88  ENLLQ 92