Pairwise Alignments

Query, 331 a.a., putative transport system permease protein (VIMSS) from Escherichia coli BW25113

Subject, 332 a.a., putative ABC transporter permease protein YphD from Escherichia coli ECRC101

 Score =  166 bits (420), Expect = 8e-46
 Identities = 104/294 (35%), Positives = 166/294 (56%), Gaps = 10/294 (3%)

Query: 14  VFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTG 73
           V  + YL      PGF S     N+L D A +GI A  MT +I+SG ID+SVG ++AF  
Sbjct: 32  VIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVS 91

Query: 74  VFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVS-Y 132
           V LA ++  F +   +A  LVL++G   G   G+L     +P+F+ TL     LRG+  +
Sbjct: 92  VCLAFLL-QFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLF 150

Query: 133 LVSEESIPIN-HPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYA 191
           + +   +PI+ + + D L      +P         L+M+ +  + +F++ +T FG  V+A
Sbjct: 151 MTNALPVPIDENEVLDWLGGQFLGVP------VSALIMMVLFALFVFISRKTAFGRSVFA 204

Query: 192 IGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASV 251
           +GGNAT+A L GI+ R   I I+ LS  LA + GI+ +    +G A A  G+E D IA+V
Sbjct: 205 VGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAV 264

Query: 252 VIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFI 305
           V+GGT LSGG G++ GTL GV +  LI   +   G ++S++ ++  G+++ + +
Sbjct: 265 VVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLG-INSFFQQVVRGVIIVVAV 317