Pairwise Alignments

Query, 419 a.a., modulator for HflB protease specific for phage lambda cII repressor (NCBI) from Escherichia coli BW25113

Subject, 391 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  317 bits (811), Expect = 5e-91
 Identities = 179/411 (43%), Positives = 248/411 (60%), Gaps = 33/411 (8%)

Query: 1   MAWNQPGNNGQDRDPWGSSKPGGNSEGNGNKGGRDQGPPDLDDIFRKLSKKLGGL-GGGK 59
           MAWN+PG N  ++DPWG     G    NG++    +GPPDLD+ FRKL + L GL GGGK
Sbjct: 1   MAWNEPGGNSNNQDPWG-----GKRRNNGDR----KGPPDLDEAFRKLQESLNGLFGGGK 51

Query: 60  GTGS--GGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGFYTIKEAERGVVTRFGKFSHL 117
             G   GG +S  G    LG  +V +AA     +W  S  Y + E E+ VV RFGK+   
Sbjct: 52  KRGGDDGGRTSKGGGYGLLGLGLVVLAA-----VWLYSAVYVVDEQEQAVVLRFGKYYET 106

Query: 118 VEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTNPEKYLYSV 177
           V PGLN     ID+    NV   R     G MLT DEN+V V + VQY+++N + ++ +V
Sbjct: 107 VGPGLNIYFPPIDKKYMENVTRERAYTKQGQMLTEDENIVEVPLTVQYKISNLQDFVLNV 166

Query: 178 TSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVN 237
             P+ SL+ AT+SALR V+G   MD++LTEGR ++ S+ +  L+  +  Y  GIT+  VN
Sbjct: 167 DQPEISLQHATESALRHVVGSTAMDQVLTEGRELMASEIKERLQRFLDTYRTGITVTQVN 226

Query: 238 FQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQT 297
            Q+A  P EV+ AFDD I ARE+EQ+   +AE Y N V P A GQAQRILE+A  Y+ + 
Sbjct: 227 VQSAAAPREVQEAFDDVIRAREDEQRSRNQAETYANGVVPEARGQAQRILEDANGYRDEV 286

Query: 298 ILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKVLGNTRKVLV-NDKGG--NLMVLP 354
           +  A+GE  RF KL+ EY+ APE+TRERLY++TM++V  NT KVLV   KGG  NL+ LP
Sbjct: 287 VSRAKGEADRFTKLVAEYRKAPEVTRERLYLDTMQEVFSNTSKVLVTGSKGGQNNLLYLP 346

Query: 355 LDQMLKGGNAPAAKSDNGASNLLRLPPASSSTTSGASNTSSTSQGDIMDQR 405
           LD+M++GG +  +    G             +T+ A+  S+ +  D++ Q+
Sbjct: 347 LDKMIEGGRSSTSAPSTG-------------STAAANEASARAAADLLQQQ 384