Pairwise Alignments

Query, 940 a.a., excinuclease ABC subunit A (NCBI) from Escherichia coli BW25113

Subject, 947 a.a., excinuclease ABC subunit UvrA from Magnetospirillum magneticum AMB-1

 Score = 1155 bits (2988), Expect = 0.0
 Identities = 580/941 (61%), Positives = 728/941 (77%), Gaps = 10/941 (1%)

Query: 4   IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I VRGAR HNLKNI++ +PRDKL+V+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 5   IRVRGAREHNLKNIDVDLPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 64

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDH 123
           FL LM+KPDV+ IEGLSPAISIEQK+TS NPRSTVGT+TEI+DY+RLL+ARVG P  P  
Sbjct: 65  FLELMQKPDVESIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPHSPAT 124

Query: 124 DVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEV 183
            +P+ +QTVSQMVD V +  EG RL LLAP ++ RKGE+ K L  L  +G+ R ++DG +
Sbjct: 125 GLPIESQTVSQMVDRVETMAEGTRLYLLAPFVRGRKGEYRKDLIELQKKGFQRVKVDGTL 184

Query: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAE 243
            ++ + P+L+ +KKH IEVVVDR  V+  L  RLA+S ETAL L+ G A+  + +    E
Sbjct: 185 YEIDEVPQLDKKKKHDIEVVVDRLVVKPGLGNRLADSIETALSLADGLAIAENAET--GE 242

Query: 244 ELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLA 303
             +FSA FACP+ G+++ E+EPRLFSFNNP GACP CDGLGV+ YFDP+ VI NP LSL 
Sbjct: 243 RTVFSAKFACPVSGFTIEEIEPRLFSFNNPFGACPACDGLGVKLYFDPELVIPNPGLSLR 302

Query: 304 GGAIRGW-DRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKYMN 362
            GAI  W    + YY Q L+ LA+HY+F ++ PW  L     +V+L+GSG E I   Y +
Sbjct: 303 EGAIAPWAGSTSQYYVQTLQGLAEHYRFKLDTPWEKLPERAREVILHGSGNEEIRIAYED 362

Query: 363 D-RGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARHV 421
             RG  + +   FEGV+ NM RRY+ET+SS +RE+L++F    PC +C G RL+ EA  V
Sbjct: 363 GFRGYHTEKS--FEGVIPNMARRYRETDSSYIREDLSRFQGTAPCETCGGARLKPEALAV 420

Query: 422 YVENTPLPAISDMSIGHAMEFFNNLK--LAGQRAKIAEKILKEIGDRLKFLVNVGLNYLT 479
            V    +   ++ SI +A ++F +L   L  +  +IA +IL+EI DRL FLV+VGL YLT
Sbjct: 421 KVRGLHISEATEFSILNARDWFADLHNHLRPKDQEIARRILREINDRLGFLVDVGLEYLT 480

Query: 480 LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGN 539
           + R + +LSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDN+RLL TL  LRD+GN
Sbjct: 481 MGRGSGSLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLATLRRLRDIGN 540

Query: 540 TVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIE 599
           TVIVVEHDEDAIR+AD+++D+GPGAG+HGG+VV+EG    +MA P S+TG+Y++G+  I 
Sbjct: 541 TVIVVEHDEDAIRSADYLVDMGPGAGIHGGQVVSEGTPAQVMADPNSMTGRYLTGQDHIP 600

Query: 600 VPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQ 659
           +P  R P N ++ L L GARGNNLK+V   +P+G  TC+TGVSG GKSTL+ +TL+    
Sbjct: 601 LPALRRPGNGKR-LSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLYKALS 659

Query: 660 RQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVP 719
           R+L GA   +P+P+  I G+E+ DK+IDIDQSPIGRTPRSNPATYTG F+P+R+ F  +P
Sbjct: 660 RRLMGAR-EQPSPFDRIDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIRDWFTELP 718

Query: 720 ESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIK 779
           ES+ RGY PGRFSFNV+GGRCEACQGDGVIK+EMHFLPD+YV CD CKGKRYNRETLEI 
Sbjct: 719 ESKVRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVQCDVCKGKRYNRETLEIT 778

Query: 780 YKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVK 839
           ++GK+I +VLDMT+EEA +FF AVPA+  K+ TL  VGL YI LGQ ATTLSGGEAQRVK
Sbjct: 779 FRGKSIADVLDMTVEEAADFFKAVPAIRDKMVTLQRVGLDYIHLGQQATTLSGGEAQRVK 838

Query: 840 LARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTAD 899
           LA+ELSKR TG+TLYILDEPTTGLHF D+++LL+V+  L D GNT++VIEHNL+VIKTAD
Sbjct: 839 LAKELSKRSTGRTLYILDEPTTGLHFEDVRKLLEVIQALVDAGNTVLVIEHNLEVIKTAD 898

Query: 900 WIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           WIVDLGPEGG GGG I+ +GTPE VA C  S+T  +L P+L
Sbjct: 899 WIVDLGPEGGDGGGRIVAAGTPEDVAACRESYTGHYLAPIL 939



 Score = 62.0 bits (149), Expect = 2e-13
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 15/121 (12%)

Query: 3   KIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           ++ + GAR +NLKN++  IP   L  VTG+SG GKS+L  +TLY            A +R
Sbjct: 612 RLSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLY-----------KALSR 660

Query: 63  QFLSLMEKPD----VDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEP 118
           + +   E+P     +D +E L   I I+Q      PRS   T T     +R  F  + E 
Sbjct: 661 RLMGAREQPSPFDRIDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIRDWFTELPES 720

Query: 119 R 119
           +
Sbjct: 721 K 721