Pairwise Alignments

Query, 940 a.a., excinuclease ABC subunit A (NCBI) from Escherichia coli BW25113

Subject, 973 a.a., ABC excinuclease subunit A from Agrobacterium fabrum C58

 Score = 1118 bits (2891), Expect = 0.0
 Identities = 564/958 (58%), Positives = 725/958 (75%), Gaps = 24/958 (2%)

Query: 4   IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I +RGAR HNLK I+L +PR+KLIV+TGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 7   ISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 66

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDH 123
           FL +M+KPDVD I+GLSPAISIEQK+TS NPRSTVGT+TEI+DY+RLLFARVG P  P  
Sbjct: 67  FLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPAT 126

Query: 124 DVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEV 183
            +P+ +QTVSQMVD +L+  EG RL +LAPI++ RKGE+ K L  L  +G+ R ++DG+ 
Sbjct: 127 GLPIESQTVSQMVDRILAFEEGTRLYILAPIVRGRKGEYKKELAELMKKGFQRVKVDGQF 186

Query: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKA- 242
            +++D P L+ + KH I+VVVDR  VR D+  RLA+S ET L+L+ G A+    D P   
Sbjct: 187 YEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFADKPLPP 246

Query: 243 -----------------EELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGV 285
                            E +LFS  FACP+ G+++ E+EPRLFSFNNP GACP+CDGLG 
Sbjct: 247 EDTAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGS 306

Query: 286 QQYFDPDRVIQNPELSLAGGAIRGWDRRNF-YYFQMLKSLADHYKFDVEAPWGSLSANVH 344
           QQ  D + ++  P  +L  GAI  W + +  YY Q L++L   + F + + W  LS    
Sbjct: 307 QQKVDENLIVPEPARTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSKEAQ 366

Query: 345 KVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNR 404
             +L G+  + IEF Y +        ++ FEG++ N+ERR+KET+S+  REE+ +++S  
Sbjct: 367 HAILQGTD-DKIEFNYQDGARSYKTVKN-FEGIVPNLERRWKETDSAWAREEIERYMSAA 424

Query: 405 PCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNL--KLAGQRAKIAEKILKE 462
           PC +C G RL+ EA  V +    +  ++ MSI  A ++F  L   L  ++ +IA +ILKE
Sbjct: 425 PCPACAGYRLKPEALAVKINKLHIGEVTQMSIRKARDWFEVLPENLNAKQNEIAVRILKE 484

Query: 463 IGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQR 522
           I +RL+FL +VGL+YL+LSR++ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQR
Sbjct: 485 IRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQR 544

Query: 523 DNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMA 582
           DN RLL TL HLRD+GNTVIVVEHDEDAI  AD+V+DIGP AG+HGG+V+AEG  + +MA
Sbjct: 545 DNARLLETLKHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQDVMA 604

Query: 583 VPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVS 642
            P+SLTG+Y+SG+  + VP +R      + +K+ GARGNNL++VT  +P+G+FT +TGVS
Sbjct: 605 NPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGARGNNLQNVTAAVPLGVFTAVTGVS 664

Query: 643 GSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPA 702
           G GKST + +TL+  A R++ GA    PA +  I G E  DKVIDIDQSPIGRTPRSNPA
Sbjct: 665 GGGKSTFLIETLYKSAARRVMGAREI-PAEHDRIDGFEFIDKVIDIDQSPIGRTPRSNPA 723

Query: 703 TYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVP 762
           TYTG FTP+R+ FAG+PE++ARGY PGRFSFNV+GGRCEACQGDGVIK+EMHFLPD+YV 
Sbjct: 724 TYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVT 783

Query: 763 CDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIR 822
           CD C GKRYNRETL++ +KGK+I +VLDMT+EE  EFF AVPA+  KLQ+L DVGL YI+
Sbjct: 784 CDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIK 843

Query: 823 LGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQG 882
           +GQ A TLSGGEAQRVKLA+ELSKR TG+TLYILDEPTTGLHF D+ +LL++LH L +QG
Sbjct: 844 VGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVNKLLEMLHALVEQG 903

Query: 883 NTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940
           N++VVIEHNL+VIKTADWI+D+GPEGG+GGGE++ +GTPE + + E S+T  FLK +L
Sbjct: 904 NSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKELL 961



 Score = 68.6 bits (166), Expect = 2e-15
 Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 611 KVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIA-- 668
           K + + GAR +NLK + L LP      +TG+SGSGKS+L  DT++   QR+   +  A  
Sbjct: 5   KTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 64

Query: 669 ----EPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFA--GVPESR 722
               E     D+  ++     I I+Q    R PRS   T T ++  +R LFA  GVP S 
Sbjct: 65  RQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSP 124

Query: 723 ARG 725
           A G
Sbjct: 125 ATG 127



 Score = 59.7 bits (143), Expect = 9e-13
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 3   KIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           +I+V GAR +NL+N+   +P      VTG+SG GKS+   +TLY    RR + +    A 
Sbjct: 634 EIKVFGARGNNLQNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPA- 692

Query: 63  QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPR 119
                 E   +D  E +   I I+Q      PRS   T T     +R  FA + E +
Sbjct: 693 ------EHDRIDGFEFIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAK 743