Pairwise Alignments

Query, 158 a.a., stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) from Escherichia coli BW25113

Subject, 167 a.a., Rsd/AlgQ family anti-sigma factor from Serratia liquefaciens MT49

 Score =  174 bits (442), Expect = 5e-49
 Identities = 90/153 (58%), Positives = 114/153 (74%), Gaps = 2/153 (1%)

Query: 1   MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60
           MLN+L++LT+RV GSN+LVD+WL  RK LLVAY  LVGIKP KE +  LNEKAL++FC +
Sbjct: 1   MLNRLESLTQRVGGSNELVDQWLQARKQLLVAYCTLVGIKPNKEKHTPLNEKALENFCHN 60

Query: 61  LVDYLSAGHFSIYERILHKLEG--NGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118
           LVDYLSAGHF IY+RI+ ++EG  + ++  +  I+P+L ANT+QIM ++D   E  ID D
Sbjct: 61  LVDYLSAGHFHIYDRIIKQVEGASSPKMTLSVNIYPKLWANTEQIMAFHDRYTEVDIDQD 120

Query: 119 NYLEFQQVLSDIGEALEARFVLEDKLILLVLDA 151
             LE  Q LSDIGE L ARF LEDKLI L  +A
Sbjct: 121 VCLELHQALSDIGETLAARFTLEDKLIQLATEA 153