Pairwise Alignments

Query, 421 a.a., ATP-dependent RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 592 a.a., ATP-dependent RNA helicase RhlB from Rhodanobacter sp. FW510-T8

 Score =  454 bits (1168), Expect = e-132
 Identities = 236/439 (53%), Positives = 303/439 (69%), Gaps = 20/439 (4%)

Query: 1   MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT 60
           MS+T LT+  F++F LHP + + L+  GF  CTPIQ L LPL LAGRDVAGQAQTGTGKT
Sbjct: 16  MSQTVLTDTFFANFDLHPLLQQGLDDSGFTRCTPIQELTLPLALAGRDVAGQAQTGTGKT 75

Query: 61  MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYG 120
            AFL +  + LL+ PA+ADRK + PRAL++APTRELA+QI  DA  +   TGLK  L YG
Sbjct: 76  CAFLVALMNRLLTTPAVADRKDSDPRALVIAPTRELAIQIDKDARNIGRHTGLKTALIYG 135

Query: 121 GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR 180
           G  YDKQ + L+ G DI+I T GRL+DY KQ   +L +++V+V+DEADRM+DLGFIKD+R
Sbjct: 136 GVDYDKQRQQLKDGCDIVIATPGRLLDYHKQGVFSLNSVEVMVIDEADRMFDLGFIKDVR 195

Query: 181 WLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSN 240
           ++FR++PP  QR  +LFSATLS+RV ELA+E M+ AE + VE +  T  ++++ +++P+ 
Sbjct: 196 FIFRKLPPREQRQVLLFSATLSHRVLELAYEHMHEAEKVVVESDNVTADKVRQLVYFPAK 255

Query: 241 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD 300
           EEKM LL  LI+   P R+IIF NTK   E +   +   G RVG ++GDV Q KR ++L 
Sbjct: 256 EEKMPLLLNLIDRLKPSRSIIFVNTKAAAERVTERVKRHGCRVGAISGDVPQLKRQKLLQ 315

Query: 301 EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA 360
            F  G LDILVATDVAARGLHIP V+HVFNYDLP + EDYVHRIGRT R GA G +IS A
Sbjct: 316 RFQEGQLDILVATDVAARGLHIPHVSHVFNYDLPHEAEDYVHRIGRTARLGAEGDAISFA 375

Query: 361 CEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRL------------------TRP 402
           C+ YA++LP IETYIG SIPV+  +P+ L+  +PKP  +                    P
Sbjct: 376 CDLYAMSLPDIETYIGQSIPVAAMDPELLV--MPKPHAIDAEFAANAAADSAAFGDVVAP 433

Query: 403 RTGNGPRRTGAPRNRRRSG 421
           R G  PRR+G      RSG
Sbjct: 434 RPGEKPRRSGGAGRGERSG 452