Pairwise Alignments

Query, 421 a.a., ATP-dependent RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 565 a.a., DEAD-box ATP-dependent RNA helicase DeaD ( CshA) from Pseudomonas sp. S08-1

 Score =  266 bits (681), Expect = 9e-76
 Identities = 151/382 (39%), Positives = 220/382 (57%), Gaps = 11/382 (2%)

Query: 11  FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70
           F+D  LHP ++ AL   G+   +PIQA A+P+ LAG D+ GQAQTGTGKT AF       
Sbjct: 8   FADLGLHPSILAALTAVGYEEPSPIQAQAIPMILAGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 71  LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLA-EATGLKLGLAYGGDGYDKQLK 129
           +       D    +P+ALI+APTRELA+Q+    E  + +  G+ +   YGG     QLK
Sbjct: 68  I-------DPAKREPQALILAPTRELALQVATAFETYSKQMPGVSVVAVYGGAPMGPQLK 120

Query: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPA 189
            L  G  I++ T GRL+D+  +N   L  I+ +VLDEAD M  LGF+ D+  +F+ MP  
Sbjct: 121 SLRMGAQIIVATPGRLVDHLSRNDQLLSTIRHLVLDEADEMLKLGFMDDLEVIFQAMPAT 180

Query: 190 NQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQT 249
            Q  ++LFSATL + +RE+A + +   +++++  + +T  RI++       ++K+  +  
Sbjct: 181 RQ--SVLFSATLPHSIREIAEKHLREPKHVKIAAKTQTVSRIEQAHLMIHADQKINAVTR 238

Query: 250 LIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDI 309
           L+E E  D  I F  TK    ++   L A G++   L GD+AQ +R R+++    G LDI
Sbjct: 239 LLEVEDFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDI 298

Query: 310 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLP 369
           +VATDVAARG+ +P +THV N D+P D E YVHRIGRTGRAG  G ++ L        L 
Sbjct: 299 VVATDVAARGIDVPRITHVLNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQ 358

Query: 370 AIETYIGHSI-PVSKYNPDALM 390
            IE   G  +  V   NP  ++
Sbjct: 359 VIERVTGQKVGEVKLPNPQQVL 380