Pairwise Alignments

Query, 421 a.a., ATP-dependent RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 474 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas sp. S08-1

 Score =  319 bits (817), Expect = 1e-91
 Identities = 173/387 (44%), Positives = 242/387 (62%), Gaps = 2/387 (0%)

Query: 10  KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69
           +F DF L P+++ A+   GF  CTPIQA  L  TL G+D  G+AQTGTGKT AFL ST  
Sbjct: 87  RFHDFRLAPELMHAIHDLGFPYCTPIQAQVLGHTLKGKDAIGRAQTGTGKTAAFLISTIT 146

Query: 70  YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK 129
            LL      +R + +PRALI+APTREL VQI  DAE L + TGL +    GG  +DKQLK
Sbjct: 147 QLLQTQVPKERYMGEPRALIIAPTRELVVQIAKDAEALTKYTGLNVMQFVGGMDFDKQLK 206

Query: 130 VLESGV-DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPP 188
            LES   DIL+ T GRL+D+ ++  ++L  ++V+VLDEADRM D+GFI  +R + R+ P 
Sbjct: 207 QLESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPM 266

Query: 189 ANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQ 248
              R  +LFSAT +  V  LA +   N   +E+EPE      +++ ++  S+++K +LL 
Sbjct: 267 KGDRQTLLFSATFTEDVMNLARQWTVNPAIVEIEPENVASDTVEQHVYAVSSKDKYKLLY 326

Query: 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLD 308
            L+ +    R ++FAN +     I   L  DG     ++GDV Q KR++ L+ F  G + 
Sbjct: 327 NLVTQNDWQRVMVFANRRDEVRRIEEKLIRDGVSAAQMSGDVPQHKRIKTLEGFREGKIR 386

Query: 309 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNL 368
           ++VATDVA RG+H+  ++HV N+ LP+  +DYVHRIGRTGRAGASG SIS A E+ A  L
Sbjct: 387 VMVATDVAGRGIHVDGISHVINFTLPEVPDDYVHRIGRTGRAGASGTSISFAGEDDAFAL 446

Query: 369 PAIETYIGHSIPVSKYNPDALMTDLPK 395
           P IE  +G  I   +  P+ L+  +P+
Sbjct: 447 PPIEELLGRKIN-CEMPPEELLKPVPR 472