Pairwise Alignments

Query, 297 a.a., predicted DNA-binding transcriptional regulator (RefSeq) from Escherichia coli BW25113

Subject, 295 a.a., AraC family transcriptional regulator from Agrobacterium fabrum C58

 Score = 65.5 bits (158), Expect = 1e-15
 Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 63  VAVYTVQGCGKILLKNGEQITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMMDI 122
           V  Y + G G +  +N   +   G  ++ L P +   +  +G  WE +W+       + I
Sbjct: 59  VLQYCIAGQGNLRYENRHYVVRPGETLLLLIPHNHRYWLEDGKEWEFFWISMNGEEALRI 118

Query: 123 PVGQQSVIYNGEIYNQELTEVAELITSPEAIKNNLAV-AFLTKIIYQWICLMYAD----- 176
                SV   G I   +   V  L      + N        + + Y+    +Y D     
Sbjct: 119 HRNILSV--TGPILKLQQETVDHLAECCSRLVNGAETPGAASAVAYEAAMTLYDDVFGSH 176

Query: 177 GKKDPQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDA 236
                + R ++++++ + + L +R SV+D+AA    S A   R+F    G  P E+ L  
Sbjct: 177 PSFGGEYRTLQQVLSYIDSHLGERLSVSDLAAVAGLSRAHFSRIFTASEGLPPAEFVLQR 236

Query: 237 RLDLALSLLKQQGN-SVGEVADTLNFFDSFHFSKAFKHKFGYAPS 280
           RL  A  LL    N  + EV+    F D  +FSK F+  +G  PS
Sbjct: 237 RLRRAAKLLTTAANIPIKEVSVLCGFEDPNYFSKVFRRLYGINPS 281