Pairwise Alignments

Query, 394 a.a., 2-module integral membrane pump; multidrug resistance (VIMSS) from Escherichia coli BW25113

Subject, 403 a.a., multidrug effflux MFS transporter from Pseudomonas sp. SVBP6

 Score =  173 bits (438), Expect = 9e-48
 Identities = 112/370 (30%), Positives = 190/370 (51%), Gaps = 8/370 (2%)

Query: 10  LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR 69
           LL+L+++V + ++A  IY+PA+ D+A  L+  +  +Q  +  Y++ Y +S L  GP+ DR
Sbjct: 13  LLLLLMIVCLPRVALDIYLPALPDIATALHASDAQLQLTLTLYMVGYALSMLISGPLCDR 72

Query: 70  VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ 129
            GRRP++L+G +I+++A+L     SS+ V+IAA  +Q +G   G V+ R + RD ++R Q
Sbjct: 73  FGRRPLLLLGGTIYLVASLACSLASSVEVMIAARLLQALGGCCGAVIGRVMVRDHFDRQQ 132

Query: 130 LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 189
             H    L+MG+ ++P+++PL+G L++T   WR  +L L +  A     +A  +PETRP 
Sbjct: 133 QGHLLGYLSMGMALAPMISPLLGSLIETTLGWRWIFLLLSLSAALSLLLIALRLPETRPP 192

Query: 190 DAPRTR---LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVS 246
            A   R   +L  Y  L G+  F  Y L +         F A S  L+   LGLSS+  +
Sbjct: 193 HAAGQRHEPVLKVYLRLLGDGYFMRYSLAIACVYCTYFPFIAESSTLLQRSLGLSSLQYA 252

Query: 247 ILFILPIPAAFFGAWFAGRPNKRFS--TLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLV 304
            +F + +     G+    R + R+S   L+ Q++   L   LL+ +        +  +++
Sbjct: 253 AVFAVTVGGYLAGSQLFRRRSGRYSADALLGQAMFLNLGGALLLMLTTRLWPEALLAIVL 312

Query: 305 PAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGS 364
           P  L     G+  P      + P+  +AG+A  L   +Q       A  S ++ Q   GS
Sbjct: 313 PMLLIMLSVGLAIPACQWAVLHPYAAIAGSASGLFFFIQ---MAFTALCSLVIGQLSDGS 369

Query: 365 LGLLMTLMGL 374
            G L  +  L
Sbjct: 370 AGPLAGMTAL 379