Pairwise Alignments

Query, 378 a.a., hypothetical protein (NCBI) from Escherichia coli BW25113

Subject, 343 a.a., predicted membrane fusion protein of efflux pump (NCBI) from Escherichia coli BW25113

 Score = 91.3 bits (225), Expect = 4e-23
 Identities = 66/251 (26%), Positives = 121/251 (48%), Gaps = 8/251 (3%)

Query: 52  PYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLM 111
           P T  A  +   I + P+V+G + E+   +NQ +++G++LF++DP  Y+A + + +A L 
Sbjct: 37  PSTNDAYASADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLA 96

Query: 112 TATHNIKTLRAQLTEAQANTTQVSAERDR---LFKNYQRYLKGSQAAVNP--FSERDIDD 166
                I   +  +   Q     V+A  ++     K     L+ ++  +     S  D+D 
Sbjct: 97  ALDKQIMLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDR 156

Query: 167 ARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPS 226
           AR    A +A +  +V  QAQ  +   S V+   +Q  ++ A +   K +LE   +RAP 
Sbjct: 157 ARTAQRAAEADL-NAVLLQAQSAASAVSGVDALVAQRAAVEADIALTKLHLEMATVRAPF 215

Query: 227 NGYVTQVLIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALP 286
           +G V  +    G +A+A  +RP+   I  +   ++A FR+  L  ++ G  A +   +  
Sbjct: 216 DGRVISLKTSVGQFASA--MRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDS 273

Query: 287 GQVFHGKLTSI 297
           G+ F GK+ SI
Sbjct: 274 GKTFEGKVDSI 284