Pairwise Alignments

Query, 339 a.a., dipeptide ABC transporter, membrane subunit (DppB) (from data) from Escherichia coli BW25113

Subject, 319 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Kangiella aquimarina DSM 16071

 Score =  275 bits (702), Expect = 1e-78
 Identities = 145/340 (42%), Positives = 221/340 (65%), Gaps = 28/340 (8%)

Query: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK 60
           M + ++R    ++ +  G+TLLTF                +RG S     Q    +G   
Sbjct: 1   MFKLLIRHGTTLLISLFGLTLLTFVL-------------SQRGDSALHIYQSQHFMG--- 44

Query: 61  PMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVL 120
               QYL Y+  ++ GD G S     PV  +F+  F AT+EL + A++FA   G+ +G++
Sbjct: 45  ----QYLEYLQYLLAGDWGYSSIHNRPVLYDFLQHFPATIELVMLALLFAIIFGLTLGIM 100

Query: 121 AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNP 180
           AA +RG   D+T +G+ L GYSMPI+WWGM+L++L S+    TPV+GR+    ++ D  P
Sbjct: 101 AANRRGKWLDNTLMGVTLAGYSMPIYWWGMLLVLLFSLTLGWTPVAGRID---YIYDVPP 157

Query: 181 LTGFMLIDTAI----WGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDY 236
           +T FMLID+ +    +G D  F +A+ H+ILPAI L TIP+A+I RMTRSS+L VL  +Y
Sbjct: 158 VTRFMLIDSLLSQDQYGFDA-FFNALLHLILPAITLSTIPMAIIARMTRSSLLGVLKAEY 216

Query: 237 IRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLID 296
           IRTAR+KGL++ R+I VHALRNA++P++T+ G+QV  +++G I+TE IF+WPG+G+WL++
Sbjct: 217 IRTARSKGLSQQRIIWVHALRNALIPILTISGVQVSIIMSGVIITEYIFAWPGVGKWLLE 276

Query: 297 ALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
           A+ RRD+  +Q G+L ++ ++I  NL +DLL   +NPR+R
Sbjct: 277 AVSRRDFASIQAGILALSLLVIAFNLALDLLASYMNPRLR 316