Pairwise Alignments

Query, 728 a.a., glycogen branching enzyme (NCBI) from Escherichia coli BW25113

Subject, 670 a.a., alpha amylase, catalytic domain protein from Bacteroides ovatus ATCC 8483

 Score =  196 bits (497), Expect = 4e-54
 Identities = 179/640 (27%), Positives = 283/640 (44%), Gaps = 87/640 (13%)

Query: 137 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPG--AHNGQLYKYEMID 194
           G  F  WAPNA  + +VG FN W+ +      ++E+G WE+ +P    H+G LYK  +  
Sbjct: 61  GWTFREWAPNATHIYMVGTFNNWEEKAAYKLKKQENGNWEINLPADAIHHGDLYKLNVYW 120

Query: 195 ANGN-LRLKSDPYAFEAQMRPETASLICGLPEKVVQTEERKKANQFDA-PISIYEVHLGS 252
             G   R+ +         + +  S     PEK  +   +KK  + D  P+ IYE H+G 
Sbjct: 121 EGGQGERIPAWATRVVQDEQTKIFSAQVWAPEKPYKF--KKKTFKPDTNPLLIYECHIGM 178

Query: 253 WRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRF 312
            ++        +Y E  ++++P     G+  ++++ I EHP+ GS+GY  +  +A + RF
Sbjct: 179 AQQEEKVG---TYNEFREKILPRIAEEGYNCIQIMAIQEHPYYGSFGYHVSSFFAASSRF 235

Query: 313 GTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDF-ALAEFDG-TNLYEHSDPREGYHQDW 370
           GT D+ +  IDAAH  G+ VI+D V  H   ++   L  F G  N Y +   R   H  W
Sbjct: 236 GTPDELKALIDAAHEMGIAVIMDIVHSHAVKNEVEGLGNFAGDPNQYFYPGARR-EHPAW 294

Query: 371 NTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPN---EF 427
           ++L ++YG+ EV +FL+ N  YW+E +  D  R D V SM+Y  YS   GE   N    F
Sbjct: 295 DSLCFDYGKNEVIHFLLSNCKYWLEEYKFDGFRFDGVTSMLY--YSHGLGEAFCNYGDYF 352

Query: 428 GGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMH 487
            G ++  AI +L   N ++ +    A+T+AEE +  PG++   + GG GF Y+  +    
Sbjct: 353 NGHQDDNAICYLTLANEVIHQVNPKAITIAEEVSGMPGLAAKVEDGGYGFDYRMAM---- 408

Query: 488 DTLDYMKLDPVYRQYHHDKLTFGILYNYT------ENFVLPLSHDEVVHGKKSILDRM-- 539
           +  DY  +  +  +   D     + +  T      +      SHD+ + G K+I+ R+  
Sbjct: 409 NIPDYW-IKTIKEKIDEDWKPSSMFWEVTNRRQDEKTISYAESHDQALVGDKTIIFRLID 467

Query: 540 -----------------PGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDA 582
                             G A  K   L           G  L FMGNEF       H  
Sbjct: 468 ADMYWHMQKGDENYVVNRGIALHKMIRLLT----SSTINGGYLNFMGNEF------GHPE 517

Query: 583 SLDWHLLEGGDNWHHGVQR----LVRDLNLTYRHH-----------KAMHELDFDPYGFE 627
            +D+     G+ W     R    LV + NLTY +            K++ +    P    
Sbjct: 518 WIDFP--REGNGWSCKYARRQWDLVDNKNLTYHYMGDFDKEMLKVLKSVKDFQATPVQEI 575

Query: 628 WLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRH-DYRFGINQPGKWREILNTDSMHY 686
           W    D+   VL + R+D     +I   NF P     DY F +  PG +  ILNTD + +
Sbjct: 576 WHNDGDQ---VLAYERKD-----LIFVFNFNPKQSFTDYGFLVT-PGAYEVILNTDDVAF 626

Query: 687 HGSNAGNGGTVH---SDEIASHGRQHSLSLTLPPLATIWL 723
            G+   +   VH   +D +    ++  L L +P    + L
Sbjct: 627 GGNGLTDDSVVHFTITDPLYKKEKKEWLKLYIPARTAVVL 666



 Score = 28.9 bits (63), Expect = 9e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 18 FADPFSVLGMHKTTAGLEVRALLPDATDVWVI------EPKTGRKLAKLE 61
          FA  +   G+H+T  G   R   P+AT ++++      E K   KL K E
Sbjct: 46 FASGYLYFGLHRTDKGWTFREWAPNATHIYMVGTFNNWEEKAAYKLKKQE 95