Pairwise Alignments

Query, 224 a.a., predicted periplasmic chaperone protein (NCBI) from Escherichia coli BW25113

Subject, 228 a.a., long polar fimbrial biogenesis chaperone LpfB from Escherichia coli ECRC98

 Score = 51.2 bits (121), Expect = 2e-11
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 5/163 (3%)

Query: 3   RHITFTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLPES 62
           + +   + +  S + LA G+   ++ ++ D  + EAS+ ++N       L  + VD    
Sbjct: 4   KFVALALSLFLSQSVLAGGVGLSSTRVIYDGSKKEASLTVQNKSKTEEFLIQSWVDDAAG 63

Query: 63  NKSIRLIPTQPVIRVEAGQVQQVRFL-LQATVPLQSEELKRVTFEGIPPKDDKSSR---V 118
           +K    I T P+ +++  +   +R + +   +P   E +  V  + IP K D S     +
Sbjct: 64  SKKTPFIITPPLFKLDPEKNNILRIVNITPGLPQDRESVYWVNVKAIPSKSDDSENKNVL 123

Query: 119 TVSIRQDLPVLIHPASLPEERETW-KFLEWRKNGDQIEISNPS 160
            +++R  + +   PA L  + +T    L + +NG+Q+ + NP+
Sbjct: 124 QIAVRTRIKLFYRPAGLKGDVKTAPNELRFTRNGNQLRVDNPT 166



 Score = 23.1 bits (48), Expect = 0.005
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 4   HITFTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLPESN 63
           +ITF  F          GMVP    L +    G  S++         + Y TI D   S 
Sbjct: 169 NITFNQFFANDKEIEKAGMVPAKGALNITLPAGVGSVS--------KIKYNTINDFGSSA 220

Query: 64  KSI 66
           + I
Sbjct: 221 EMI 223