Pairwise Alignments

Query, 477 a.a., D-alanyl-D-alanine carboxypeptidase (NCBI) from Escherichia coli BW25113

Subject, 481 a.a., penicillin-binding protein from Pseudomonas simiae WCS417

 Score =  149 bits (375), Expect = 3e-40
 Identities = 127/453 (28%), Positives = 209/453 (46%), Gaps = 18/453 (3%)

Query: 6   FIIGLTSCIAFSVQAANVDEYITQLPA--GANLALMVQKVGASAPAIDYHSQQMALPAST 63
           F++G  + ++ +   A +++ +   PA  GA ++LMV+   + +    ++S+   +PAS 
Sbjct: 14  FLLGGCASVSPTSTPATLEQLLAD-PALNGATVSLMVRDARSGSTLYQHNSRTRLIPASN 72

Query: 64  QKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLKRQDIRNMVATL 123
            K++T  AA+  LGP +RF+T L + G ++   L G+L  +   DPT +  D + + A L
Sbjct: 73  LKLLTTAAAMDVLGPQYRFSTQLLSNGTLQGERLTGNLYLKGLGDPTTQFADYQALAAQL 132

Query: 124 KKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNC---FSVSLYS 180
              GV Q+ G+++ D + F +      W  +D +  + A  +A  V  N        L +
Sbjct: 133 AAQGVRQVQGDLVFDDTFFDAERLGVDWAHDDESTYYGAQISALTVSPNTDFDAGTLLVT 192

Query: 181 APKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSE 240
           A  P  +         P T + Q+           Y          N   LTG L    +
Sbjct: 193 AKAPSGVGQPVSVVVSPSTDYVQLSNRAVSGPGNNYGITR--QHGTNLLQLTGTLAPGKQ 250

Query: 241 PLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLK 300
                 +V +       + +  L Q GI   G  +          V+A  QSAPL  LL 
Sbjct: 251 SRQWV-SVWEPTQLVANLFEQALAQQGIQVLGRRVIGGASPVTARVLAEHQSAPLQALLT 309

Query: 301 IMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLS 360
            +LK S+N +++   + +G    N  GT +AG  AV   +R+Q G+D       DGSGLS
Sbjct: 310 PLLKLSNNNMSEAFLKAMGRKASNA-GTAQAGVAAVADFMRRQ-GLDPMTLSQVDGSGLS 367

Query: 361 RHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYD-----GSLQYRAGLHQAGVDGKVS 415
           R NL++   +  +L   A+      + + LP+AG       GSL+YR  L     +  + 
Sbjct: 368 RRNLVSSQNLTDLLLATAKQPWFEAWYNALPIAGNTDRISGGSLRYR--LRGTPAENNLH 425

Query: 416 AKTGSLQGVYNLAGFITTASGQRMAFVQYLSGY 448
           AKTGS+ GV +L+G+IT A G+R+ F    + Y
Sbjct: 426 AKTGSMAGVSSLSGYITDAQGRRLVFSMISNNY 458