Pairwise Alignments

Query, 346 a.a., predicted permease (NCBI) from Escherichia coli BW25113

Subject, 351 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  442 bits (1138), Expect = e-129
 Identities = 219/330 (66%), Positives = 257/330 (77%), Gaps = 5/330 (1%)

Query: 15  WWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYF 74
           WWKPALF L+   GL+YVKW PYY KAF AA+ HSIG SIL    + P  AAL YA +YF
Sbjct: 16  WWKPALFLLIACVGLYYVKWSPYYLKAFVAADNHSIGASILNDQQSAPLAAALAYAQVYF 75

Query: 75  LAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAA 134
           LA+WKAAVL VILGSL+QVLIPRDWLLR  G++    TL G LF+LPGMMC+CCAAPVAA
Sbjct: 76  LAIWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGLGSTLRGGLFALPGMMCSCCAAPVAA 135

Query: 135 GMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKW 194
           GMRRQQVS+G ALAFW+ NPVLNPATLVFMGFVLGWGF A+RLVAG+V+V+ ++ + Q+ 
Sbjct: 136 GMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWGFTALRLVAGIVLVVGVSLVAQRI 195

Query: 195 VR----ETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLF 250
            R      P  +A  E+ + E+Q  F SRW R LW LFWSTIPVYILAVL+LGAARVWLF
Sbjct: 196 SRPDQVPEPALEAMAEVSVVESQ-PFLSRWLRTLWQLFWSTIPVYILAVLILGAARVWLF 254

Query: 251 PHADGAVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSL 310
           PH DGA+ NSL+W+V +A+ G LFVIPTAAEIPIVQTMM  GMGT PA+ALLMTLP+VSL
Sbjct: 255 PHVDGAMTNSLVWLVPLAIVGTLFVIPTAAEIPIVQTMMALGMGTGPAVALLMTLPSVSL 314

Query: 311 PSLIMLRKAFPAKALWLTGAMVAVSGVIVG 340
           PSL+MLRK F A+ L     +  + GV+ G
Sbjct: 315 PSLLMLRKDFDARVLATVAGLTMLVGVVCG 344