Pairwise Alignments

Query, 838 a.a., predicted outer membrane protein (NCBI) from Escherichia coli BW25113

Subject, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

 Score =  443 bits (1140), Expect = e-128
 Identities = 270/784 (34%), Positives = 419/784 (53%), Gaps = 20/784 (2%)

Query: 62  LSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEI 121
           LS  +      PG Y+V++ +N +   Q ++ F    +  LQP      L E G+++D  
Sbjct: 59  LSMLTSDQGLAPGRYRVEVQVNLEPAGQHELDFQPGPDGELQPCLPARLLGEWGMRLD-- 116

Query: 122 PALAEKDDD-SVINSLEQIIPGTAAEFDFNHQQLNLSIPQIALYRDARGYVSPSRWDDGI 180
            ALA  +D  S    L  ++PG    F      L +SIPQI++ R+    V PSRWD GI
Sbjct: 117 -ALANPEDQASACLDLLTVVPGAQIVFTPTELHLAISIPQISMRRNTANQVDPSRWDSGI 175

Query: 181 PTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQ-TSSWNTIS 239
              F NY  +  + R R   R     L + +G N G WRLR+  +W +  Q  + W    
Sbjct: 176 NAAFINYQASTLNGRNRSSGRYTSNDLYLNSGINLGEWRLRSTQSWRQGSQGKTEWTRAQ 235

Query: 240 SYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANS 299
           +Y QRDI    + L +GE+ T   +F S   +GV++ASD  ML ++QRG+AP +RG+A S
Sbjct: 236 TYAQRDIPGTLANLTIGETFTDREVFRSVPISGVRVASDMGMLADNQRGYAPIIRGVAQS 295

Query: 300 SAIVTIRQNGYVIYQSNVSAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPM 359
            A V I Q+GY IY + VSAG + I+DL  ++ SG+LEV + E+DG  RRFIQPYS++  
Sbjct: 296 RAKVEIWQHGYPIYSTYVSAGPYAIDDL-STAGSGELEVVVTEADGQVRRFIQPYSTMSN 354

Query: 360 MQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIG 419
           + RPG  +YSAT GRY  + +SD + P   + T   G     T+YGGL+ SE Y A  +G
Sbjct: 355 LLRPGVWRYSATVGRY--NPSSDLETPLLWQGTLAVGSYWDTTVYGGLMASEFYRAGNLG 412

Query: 420 IGGTLGALGALSMDINRADTQFDNQHS--FHGYQWRTQYIKDIPETNTNIAVSYYRYTND 477
               LG LGA++ D+ +A +  DN H     G  +  +Y K    T TN+  + YRY+  
Sbjct: 413 FSKDLGHLGAVAFDVTQASSAIDNAHEREVQGSSYALKYAKAFT-TQTNLRFAGYRYSTQ 471

Query: 478 GYFSFNEA---NTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNIS 534
           GY  F+E     +++  ++  ++S ++ ++ Q++    SL  + SQQDYW +N   R   
Sbjct: 472 GYRDFDEVVRQRSQDTTFSGSRRSRLEASVHQSLGRTSSLTLTLSQQDYWRSNATQRQYQ 531

Query: 535 VGVSGQQWGVGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQ 594
              + Q  GVGY+L    S      NDR   L++++PL  +  R+  ++ +    +  +Q
Sbjct: 532 FNFNTQHRGVGYNLFASQSLTDRYGNDRQFGLSVTVPLH-FGHRANATFDLQHNANGYSQ 590

Query: 595 HEMRLDGSLLDDGR-LSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNY 653
               L GS  D  R LSYS   S D+     ++L+  +++PY + SAGY+  ++    + 
Sbjct: 591 RAT-LSGS--DSARALSYSTSLSRDEHARKTAALSLGHQAPYASVSAGYTEADNYRSLSL 647

Query: 654 GVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQE 713
             +G V++H  G+   +YLG+  ALI+  G + V +QN  G  T+  GYA++PYL  Y+ 
Sbjct: 648 NASGAVLLHADGLEFGRYLGDTAALIEVPGVANVGLQNATGTRTNSRGYALLPYLQPYRT 707

Query: 714 NRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGAL 773
           N + ++T +L  +V+++     VVP +GA+V  RF A    R+++T+ D  G+PLPFGA 
Sbjct: 708 NSVVLETDRLDPDVEIDNGIAQVVPRQGAVVKHRFEARRVSRLVLTLHDTQGQPLPFGAQ 767

Query: 774 ASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQG 833
              ++  Q  +V + G++ L+   S+ Q   V WG Q +  CQ      D+       Q 
Sbjct: 768 VLAENGTQLGMVGQAGLVMLTN-PSQEQPLQVSWGEQPNAGCQVHLDELDAPVVDGYRQQ 826

Query: 834 TAQC 837
           T  C
Sbjct: 827 TLTC 830