Pairwise Alignments

Query, 838 a.a., predicted outer membrane protein (NCBI) from Escherichia coli BW25113

Subject, 870 a.a., Outer membrane usher protein SfmD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  577 bits (1486), Expect = e-168
 Identities = 323/848 (38%), Positives = 475/848 (56%), Gaps = 55/848 (6%)

Query: 34  LCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKIT 93
           LC   +  E YF+P  L    + +   DLSRF K   Q PG Y+VDIW N + V+ + I 
Sbjct: 29  LCPLTSRGESYFNPAFLSADTASV--ADLSRFEKGNHQPPGIYRVDIWRNDEFVATQDIR 86

Query: 94  FTANAEQL------LQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEF 147
           F A A         L P FT E ++ LG+     P +++K  D+    L + IPG    F
Sbjct: 87  FEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFP-VSDKGVDTTCIHLPEKIPGAEVAF 145

Query: 148 DFNHQQLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYL 207
           DF   +LN+S+PQ +L   ARGY+ P  WD+GIP    NYSFTGS     +G  S   +L
Sbjct: 146 DFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTGS-----RGTDSDSYFL 200

Query: 208 NMQNGANFGPWRLRNYSTWTRND----QTSSWNTISSYLQRDIKALKSQLLLGESATSGS 263
           ++ +G N+GPWRLRN   W  +      +  WN I +++QR I  LKS+L++G+S T   
Sbjct: 201 SLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQRAIIPLKSELVMGDSNTGND 260

Query: 264 IFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVSAGAFE 323
           +F S  F G +L S DNM P+S +G+APTVRGIA ++A +TIRQNGYVIYQS VS GAF 
Sbjct: 261 VFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA 320

Query: 324 INDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDS 383
           I DL P+S+SGDLEVT++E DG+Q+R+  PYS++P++QR G +KY   AG +R+  NS  
Sbjct: 321 ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRS-GNSQQ 379

Query: 384 KEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDN 443
             P F + T I GL    T YGG   ++ Y A+ +G G  LG  GA+S+D+  A +Q  +
Sbjct: 380 SSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLAD 439

Query: 444 QHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFNEANTR-----NWDYNS---- 494
             +  G   R  Y K +    TN  +  YRY+  G+++ ++   R     +++Y+S    
Sbjct: 440 DSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEYDSDGRR 499

Query: 495 --------------RQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQ 540
                          +K   Q NISQ + D  SLY SGSQQ+YW   D N    +G +  
Sbjct: 500 HKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASG 559

Query: 541 QWGVGYSLNYQYSRYTDQNN-DRALSLNLSIPL----------ERWLPRSRVSYQMTSQK 589
             G+ YSL++ +S     +  DR L+ N+S+P           +  L R+  ++     +
Sbjct: 560 WQGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNR 619

Query: 590 DRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSS 649
           D     +  + G+LL+   LSYS+ Q     N ++ S +AS+++ YGT   GY+Y  D  
Sbjct: 620 DGDNSWQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQH 679

Query: 650 QYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLT 709
            YN+ ++GGVV H  G+T SQ LG+   LI A GA GVRI+N  G+ TD  GYAV+PY T
Sbjct: 680 DYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRGYAVMPYAT 739

Query: 710 TYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLP 769
            Y+ NR+++DT  + ++ D+E     VVP  GA+V A F+  IG R ++T +   G+PLP
Sbjct: 740 VYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIIT-ARLGGRPLP 798

Query: 770 FGALASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTS 829
           FGA+     +G  S+V + G +YLSG+  K + + ++WG   + +C   ++  +     +
Sbjct: 799 FGAIVRETASGITSMVGDDGQIYLSGLPLKGELF-IQWGEGKNARCIAPYALAEDSLKQA 857

Query: 830 VLQGTAQC 837
           +   +A C
Sbjct: 858 ITIASATC 865