Pairwise Alignments

Query, 838 a.a., predicted outer membrane protein (NCBI) from Escherichia coli BW25113

Subject, 873 a.a., type 1 fimbriae anchoring protein FimD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  590 bits (1520), Expect = e-172
 Identities = 333/847 (39%), Positives = 494/847 (58%), Gaps = 59/847 (6%)

Query: 42  EYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTA----- 96
           E YF+P  L    S +   DLS FS+  AQ  G Y+VD++LN   ++ + I F A     
Sbjct: 36  ENYFNPAFLSDDPSAV--ADLSTFSRN-AQAAGMYRVDVYLNNTFLATRDIAFQAVKTTG 92

Query: 97  ----NAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQ 152
                 +  L+   T E L+ +G+     P LA+    S  + L   IP     FDF  Q
Sbjct: 93  KSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPD-LASAIPAARTRFDFAQQ 151

Query: 153 QLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQ--GNRSQRQYLNMQ 210
           +L++SIPQ A+   ARGY+ P  WD+GI  L  NY+FTG++++ R   G+     +L + 
Sbjct: 152 RLDISIPQAAMVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLN 211

Query: 211 NGANFGPWRLRNYSTWTRN----DQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFS 266
           +G N G WRLR+YSTW  N    +  S W  IS+YL+RD+  L+ +L  G+S T  ++F 
Sbjct: 212 SGLNLGAWRLRDYSTWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFD 271

Query: 267 SYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVSAGAFEIND 326
           S  F G+QLASDDNMLP+S +GFAPT+ GIA S+A VTIRQNGY+I Q  V  GAF IND
Sbjct: 272 SLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQRYVPPGAFTIND 331

Query: 327 LYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEP 386
           LYP++ SGDL V ++ESDG+  R+  PYS++P++QR G LKY+AT   YR+D +S  ++ 
Sbjct: 332 LYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSD-SSQKEKV 390

Query: 387 EFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHS 446
           +F++AT I+GL + FTLYGG   S  Y+AL IG G  LG  GA+S+D+ +A +   + ++
Sbjct: 391 KFSQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNT 450

Query: 447 FHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFNEANTR---NWDYNSR-------- 495
           + G   R  Y K + ++ TN+ +  YRY+  G+++ ++   +    +D +SR        
Sbjct: 451 YQGQSLRFLYAKSLAQSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRP 510

Query: 496 -----------QKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGV 544
                      ++ ++Q +I+Q +    SL+ +GSQQ YW  ++K+  + VG S    G+
Sbjct: 511 EWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQVGYSDTLAGI 570

Query: 545 GYSLNYQYSRYT-DQNNDRALSLNLSIPLERWLPRS---------RVSYQMTSQKDRPTQ 594
            +S++Y  ++   D   D+  +LN+S+PL +WL              ++  ++ K     
Sbjct: 571 AWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHGDEVTRHHNVYATFSTSTDKQHNVT 630

Query: 595 HEMRLDGSLLDDGRLSYSLEQSLDDDN-NHNSSLNASYRSPYGTFSAGY--SYGNDSSQY 651
               L G+LLD+  LSY+++Q   +     + + +  Y    G  + GY  S   D  Q 
Sbjct: 631 QNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVSDNGDYQQV 690

Query: 652 NYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTY 711
           NYG++GG+V H HGVTLSQ LGN   LI A GA+ V + + PGI TD  GYAVVPY TTY
Sbjct: 691 NYGLSGGLVAHAHGVTLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTY 750

Query: 712 QENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFG 771
           ++NR+++D   + D+VD++     VVP  GA+V ARF A +G R LVT+ + NGKP+PFG
Sbjct: 751 RQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLARFKARVGARALVTL-NHNGKPVPFG 809

Query: 772 ALASNDDTGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVL 831
           A  + +D   ++IVDE G +YLSG+S++     VRWGN  DQQC  ++    S    S  
Sbjct: 810 ATVTVNDRHAEAIVDEAGEVYLSGLSAQG-VLHVRWGNLPDQQCVASYHLSSSRQILS-- 866

Query: 832 QGTAQCH 838
           +  A+CH
Sbjct: 867 RQHAECH 873