Pairwise Alignments

Query, 838 a.a., predicted outer membrane protein (NCBI) from Escherichia coli BW25113

Subject, 809 a.a., type 1 fimbriae anchoring protein FimD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  580 bits (1496), Expect = e-170
 Identities = 325/816 (39%), Positives = 481/816 (58%), Gaps = 36/816 (4%)

Query: 50  LETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITF----TANAEQLLQPQ 105
           LE  + G++  DLS F K   Q  GTY VDI++N   V  K I F    +A+ +  LQP 
Sbjct: 1   LENDEPGVENVDLSVFEKG-GQAEGTYNVDIYINNTSVETKNIAFKNKKSADNKLSLQPC 59

Query: 106 FTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQQLNLSIPQIALYR 165
            +VEQL++ G+K +  P L  K+D +    L  ++ G  A+F+    +L+L+IPQIAL  
Sbjct: 60  LSVEQLKQWGVKTENFPEL--KNDPNGCTDLS-LLAGAVAKFNVIGNRLDLAIPQIALIA 116

Query: 166 DARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQR-QYLNMQNGANFGPWRLRNYS 224
           D R +V  S WD+GI     NYSFTGS +     NR++  +Y N++ G N G WR RNYS
Sbjct: 117 DPREFVPTSEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYS 176

Query: 225 TWTRN-DQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLP 283
           TW  + D  +SW++  +Y+ RDI+ LK QL+ GE+ T   +F S +F GVQ++SDD+MLP
Sbjct: 177 TWNHDSDGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLP 236

Query: 284 NSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVSAGAFEINDLYPSSNSGDLEVTIEES 343
           +S +GFAP +RG+A SSA VT+ QNGY IY++NV AG F INDLYP+  SGDL VTI+ES
Sbjct: 237 DSMKGFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKES 296

Query: 344 DGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTL 403
           DG+++ FI PY+S+P++QR GHLKY  T GR R+ +++ S +  FAE TA+YGL    T 
Sbjct: 297 DGSEQHFIVPYASVPVLQREGHLKYDLTVGRTRS-SDTHSAQQNFAELTALYGLAGGITA 355

Query: 404 YGGL---LGSEDYYALGIGIGGTLGALGALSMDINRADTQFDN----QHSFHGYQWRTQY 456
           YGG+   L ++ Y+A  IG G  LG LGALS+D+  + ++         +  G  WR +Y
Sbjct: 356 YGGIESTLSNDVYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIRY 415

Query: 457 IKDIPETNTNIAVSYYRYTNDGYFSFNEANTRNWD--YNSRQKSEIQFNISQTIFDGVSL 514
            KDI  T TN  V+ YRY+   Y++  +      D  +    ++    ++SQ I  G S+
Sbjct: 416 SKDIQSTGTNFTVAGYRYSTKDYYALEDVLDTYSDNSHYDHVRNRTDLSLSQDIIYG-SI 474

Query: 515 YASGSQQDYWGNNDKNRNISVGVSGQQWGVGYSLNYQYSRY----------TDQNNDRAL 564
             +   +DYW N+    ++ +G +     V Y +NY Y+            T+ +ND+ +
Sbjct: 475 SLTLYNEDYW-NDTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDDTEDSNDQQI 533

Query: 565 SLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHN 624
           S+N+SIPL+ ++P +  +Y M S KD  T H + L+G+ L    LS+S+++         
Sbjct: 534 SINISIPLDAFMPSTYATYNMNSAKDGDTTHTVGLNGTALAQKNLSWSVQEGYSSQEKAT 593

Query: 625 S-SLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANG 683
           S +++A+Y   Y   + GYSY N   + NYGV  GV++H +G+TLSQ + +   L+ A G
Sbjct: 594 SGNVSATYNGTYADINGGYSYDNHMRRLNYGVQVGVLLHRNGLTLSQPMDDTIILVKAPG 653

Query: 684 ASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAM 743
           A+GV + N  G+ TD  GYAVVPY + Y  N +S+DTT +  N++L  T++ +VP RGA+
Sbjct: 654 AAGVPVNNETGVDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAV 713

Query: 744 VAARFNANIGYRVLVTVSDRNGKPLPFGALASN--DDTGQQSIVDEGGILYLSGISSKSQ 801
           V A +  NIGY+ L+ ++  N  P+PFGA  S+        S V + G  +L+G+  K  
Sbjct: 714 VRAEYKTNIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQAWLTGL-EKQG 772

Query: 802 SWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQC 837
              V+WG  A  QCQ ++  P S   + V     QC
Sbjct: 773 RLLVKWGPTAADQCQVSYRIPSSPSASGVEILHEQC 808