Pairwise Alignments

Query, 838 a.a., predicted outer membrane protein (NCBI) from Escherichia coli BW25113

Subject, 878 a.a., fimbrial usher outer membrane porin protein; FimCD chaperone-usher from Escherichia coli BL21

 Score =  568 bits (1465), Expect = e-166
 Identities = 322/845 (38%), Positives = 476/845 (56%), Gaps = 56/845 (6%)

Query: 39  NAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITF-TAN 97
           ++ + YF+P  L      +   DLSRF       PGTY+VDI+LN   ++ + +TF T +
Sbjct: 43  SSADLYFNPRFLADDPQAV--ADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGD 100

Query: 98  AEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQQLNLS 157
           +EQ + P  T  QL  +G+    +  +    DD+ +  L  ++    A  D   Q+LNL+
Sbjct: 101 SEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACV-PLTTMVQDATAHLDVGQQRLNLT 159

Query: 158 IPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGP 217
           IPQ  +   ARGY+ P  WD GI     NY+F+G+  + R G  S   YLN+Q+G N G 
Sbjct: 160 IPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGA 219

Query: 218 WRLRNYSTWTRNDQTSS------WNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFT 271
           WRLR+ +TW+ N    S      W  I+++L+RDI  L+S+L LG+  T G IF    F 
Sbjct: 220 WRLRDNTTWSYNSSDRSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFR 279

Query: 272 GVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVSAGAFEINDLYPSS 331
           G QLASDDNMLP+SQRGFAP + GIA  +A VTI+QNGY IY S V  G F IND+Y + 
Sbjct: 280 GAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAG 339

Query: 332 NSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEA 391
           NSGDL+VTI+E+DG+ + F  PYSS+P++QR GH +YS TAG YR+  N+  ++P F ++
Sbjct: 340 NSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRS-GNAQQEKPRFFQS 398

Query: 392 TAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQ 451
           T ++GL   +T+YGG   ++ Y A   GIG  +GALGALS+D+ +A++   +     G  
Sbjct: 399 TLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQS 458

Query: 452 WRTQYIKDIPETNTNIAVSYYRYTNDGYFSF--------NEANTRNWD------------ 491
            R  Y K + E+ TNI +  YRY+  GYF+F        N  N    D            
Sbjct: 459 VRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDY 518

Query: 492 ----YNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGVGYS 547
               YN R K  +Q  ++Q +    +LY SGS Q YWG ++ +     G++     + ++
Sbjct: 519 YNLAYNKRGK--LQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 576

Query: 548 LNYQYSRYT-DQNNDRALSLNLSIPLERWL--------PRSRVSYQMTSQKDRPTQHEMR 598
           L+Y  ++    +  D+ L+LN++IP   WL          +  SY M+   +    +   
Sbjct: 577 LSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAG 636

Query: 599 LDGSLLDDGRLSYSLEQSLDDDNNHNSS----LNASYRSPYGTFSAGYSYGNDSSQYNYG 654
           + G+LL+D  LSYS++       + NS        +YR  YG  + GYS+ +D  Q  YG
Sbjct: 637 VYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYG 696

Query: 655 VTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQEN 714
           V+GGV+ H +GVTL Q L +   L+ A GA   +++N  G+ TD  GYAV+PY T Y+EN
Sbjct: 697 VSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYREN 756

Query: 715 RLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALA 774
           R+++DT  L DNVDL+     VVP RGA+V A F A +G ++L+T++  N KPLPFGA+ 
Sbjct: 757 RVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLT-HNNKPLPFGAMV 815

Query: 775 SNDDTGQQSIVDEGGILYLSG--ISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQ 832
           +++ +    IV + G +YLSG  ++ K Q   V+WG + +  C   +  P       + Q
Sbjct: 816 TSESSQSSGIVADNGQVYLSGMPLAGKVQ---VKWGEEENAHCVANYQLPPESQQQLLTQ 872

Query: 833 GTAQC 837
            +A+C
Sbjct: 873 LSAEC 877