Pairwise Alignments

Query, 838 a.a., predicted outer membrane protein (NCBI) from Escherichia coli BW25113

Subject, 866 a.a., putative outer membrane fimbrial subunit export usher protein from Escherichia coli BL21

 Score =  567 bits (1460), Expect = e-165
 Identities = 335/869 (38%), Positives = 494/869 (56%), Gaps = 48/869 (5%)

Query: 11  RTPKQLALIIKRCLPMVLTGSGMLCTTA-NAE-EYYFDPIMLETTKSGMQTTDLSRFSKK 68
           RT +Q +L+    +P  + G  +  + A NA+ E +FDP   +   S     DLSRF K 
Sbjct: 3   RTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPS--MVADLSRFEKG 60

Query: 69  YAQLPGTYQVDIWLNKKKVSQKKITFTA-NAEQLLQPQFTVEQLRELGIKVDEIPALAEK 127
               PG Y+VDI LN+  V  + + F     E+ +    T E L  +G+  D  PA  + 
Sbjct: 61  QKITPGGYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQL 120

Query: 128 DDDSVINSLEQIIPGTAAEFDFNHQQLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNY 187
           D  + +  L +IIP  +  F+ N  +L +S+PQIA+  +ARGYV P RWD+GI  L   Y
Sbjct: 121 DKQACV-PLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGY 179

Query: 188 SFTGSDNRYRQGNRSQRQ--YLNMQNGANFGPWRLRNYSTWTRND-QTSSWNTISSYLQR 244
           SF+G+++ +   +       +LN+ +G N GPWRLRN STW+R+  QT+ W  +SSYLQR
Sbjct: 180 SFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQR 239

Query: 245 DIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVT 304
            +  LK +L +G+  T+G  F S +F GVQLASDDNMLP+S +GFAP VRGIA S+A +T
Sbjct: 240 AVIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQIT 299

Query: 305 IRQNGYVIYQSNVSAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPG 364
           I+QNGY IYQ+ VS GAFEI+DLY +S+SGDL V I+E+DG+   +  P+SS+P++QR G
Sbjct: 300 IKQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQG 359

Query: 365 HLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTL 424
            +KY+ T  +YR ++N + +E +FA+AT  +G     T YGG   +E Y A   G+G   
Sbjct: 360 RIKYAVTLAKYRTNSN-EQQESKFAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNF 418

Query: 425 GALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFNE 484
           G  GA+S D  +A +   +Q    G  +R  Y K +    TN  +  YRY+  G+++ ++
Sbjct: 419 GDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNHLGTNFQLMGYRYSTSGFYTLSD 478

Query: 485 ANTRNWD------------------YN--SRQKSEIQFNISQTIFDGVSLYASGSQQDYW 524
              ++ D                  YN    ++ ++Q NISQ + +  S Y SGSQQ YW
Sbjct: 479 TMYKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYW 538

Query: 525 GNNDKNRNISVGVSGQQWGVGYSLNYQYSRYTDQ-NNDRALSLNLSIPLERWLPRSRVSY 583
             + ++R +  G + Q   +   +++ YS+   Q + D+  +LN S+PL   LPRS  SY
Sbjct: 539 HTDQQDRLLQFGYNTQIKDLSLGISWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSY 598

Query: 584 Q-------MTS----QKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDD-NNHNSSLNASY 631
                   MTS      +  T   + L  +LLDDG LSYS++Q  + +    N S +  Y
Sbjct: 599 TRKKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDY 658

Query: 632 RSPYGTFSAGYSYGNDSS--QYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRI 689
           +  +     GY+Y ++ S  Q NY ++G +V H  G+TL Q LG    LI A GA   R+
Sbjct: 659 KGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRV 718

Query: 690 QNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFN 749
            N  G+ TD  GY VVPY T+Y+ENR+++D   L  NVDLE     VVP +GA+V A FN
Sbjct: 719 ANSTGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFN 778

Query: 750 ANIGYRVLVTVSDRNGKPLPFGALASNDDTGQQS-IVDEGGILYLSGISSKSQSWTVRWG 808
           A+ G RVL+  S + G PL FGA+A+ D     S I+D+ G LY++G+ +K  + +VRWG
Sbjct: 779 AHAGARVLMKTS-KQGIPLRFGAIATLDGVQANSGIIDDDGSLYMAGLPAKG-TISVRWG 836

Query: 809 NQADQQCQFAFSTPDSEPTTSVLQGTAQC 837
              DQ C   +   + +  +++ +  A C
Sbjct: 837 EAPDQICHINYELTEQQINSAITRMDAIC 865