Pairwise Alignments

Query, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

Subject, 569 a.a., ssDNA-specific exonuclease RecJ from Pseudomonas putida KT2440

 Score =  641 bits (1654), Expect = 0.0
 Identities = 325/572 (56%), Positives = 427/572 (74%), Gaps = 4/572 (0%)

Query: 5   IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEIL 64
           +++  R +  T      LPPLL RLYA+RGV+S  EL++S+  +LP+QQL G+E  V++L
Sbjct: 1   MRIEPRPLPPTLPFLGNLPPLLTRLYAARGVQSEAELDKSLARLLPYQQLKGIEAGVDLL 60

Query: 65  YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124
             A  +  RI++VGDFDADGAT++ + VL +R LG +++DYLVPNRFE GYGL+PE+V+ 
Sbjct: 61  VEAIDQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV 120

Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184
           A  R  QL++TVDNGISS  GV  A++ G+ V+VTDHHLPG+ LP A+AIINPN   C+F
Sbjct: 121 ALQRQPQLLITVDNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSF 180

Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244
           PSKSLAGVGV FY+++ALR  LR  G ++ +    PN+ ELLDLVALG+VADVVPLDANN
Sbjct: 181 PSKSLAGVGVIFYVLMALRARLRSLGRYEAQ--PQPNIGELLDLVALGSVADVVPLDANN 238

Query: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304
           RIL  QG+ RIRAG+ RPG+KA+LEVA RD +++ ++DLGF LGPRLNAAGRLDDMS+G+
Sbjct: 239 RILVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGI 298

Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364
             LLC++   A+ +A +LD LNQ RK IEQGMQ EAL   + L    +++P GL ++  +
Sbjct: 299 ECLLCEDAALAQDMAQQLDDLNQDRKSIEQGMQREALAQLKDLPV--ESMPYGLCLFDAD 356

Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML 424
           WHQGV+GILASR+KER+HRP IAFA AGDG LKGS RS+ G H+RDAL+ +   +P ++ 
Sbjct: 357 WHQGVIGILASRLKERYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLIS 416

Query: 425 KFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQL 484
           KFGGHAMAAGLSL E  F  F + F E V   L    L G ++SDG L+  E  +++A+ 
Sbjct: 417 KFGGHAMAAGLSLPEANFSAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKA 476

Query: 485 LRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD 544
           LR AGPWGQ FPEPLF G F+L++QR+VGERHLKV+++   G   LDGIAF +D  +WP+
Sbjct: 477 LRHAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDREVWPN 536

Query: 545 NGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576
             VR V+LAYKLD+NEFRGN S+Q++I ++ P
Sbjct: 537 PTVRWVELAYKLDVNEFRGNESVQLMIAHMEP 568